Wall clock time and date at job start Mon Mar 30 2020 02:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47248 * 2 1 4 4 C 1.50703 * 109.46975 * 240.00375 * 2 1 3 5 5 H 1.08005 * 119.99802 * 244.25500 * 4 2 1 6 6 C 1.37877 * 120.00448 * 64.24604 * 4 2 1 7 7 N 1.31515 * 119.99597 * 5.64096 * 6 4 2 8 8 Si 1.86792 * 120.00423 * 185.63839 * 6 4 2 9 9 H 1.48501 * 109.47062 * 60.00029 * 8 6 4 10 10 H 1.48506 * 109.47256 * 300.00382 * 8 6 4 11 11 H 1.48494 * 109.47284 * 179.97438 * 8 6 4 12 12 C 1.52995 * 109.47332 * 120.00127 * 2 1 3 13 13 C 1.52997 * 109.47231 * 304.99958 * 12 2 1 14 14 C 1.53784 * 113.61202 * 272.49770 * 13 12 2 15 15 C 1.53783 * 87.07915 * 220.01711 * 14 13 12 16 16 C 1.53783 * 113.61404 * 175.00056 * 13 12 2 17 17 H 1.08994 * 109.47260 * 186.56810 * 1 2 3 18 18 H 1.09007 * 109.46776 * 306.56542 * 1 2 3 19 19 H 1.08999 * 109.47583 * 66.55864 * 1 2 3 20 20 H 0.96703 * 114.00417 * 180.02562 * 3 2 1 21 21 H 0.97001 * 120.00354 * 3.30497 * 7 6 4 22 22 H 1.09001 * 109.46954 * 65.00050 * 12 2 1 23 23 H 1.09007 * 109.47509 * 184.99788 * 12 2 1 24 24 H 1.09000 * 112.85184 * 43.79972 * 13 12 2 25 25 H 1.08999 * 113.61335 * 334.55992 * 14 13 12 26 26 H 1.08999 * 113.61573 * 105.47056 * 14 13 12 27 27 H 1.09000 * 113.61473 * 270.88365 * 15 14 13 28 28 H 1.08999 * 113.61505 * 139.97739 * 15 14 13 29 29 H 1.09004 * 113.61029 * 254.52368 * 16 13 12 30 30 H 1.08993 * 113.61535 * 25.34692 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5953 -1.6268 -1.1330 6 6 1.7729 -0.1904 -2.4809 7 7 1.1850 0.9802 -2.5972 8 14 2.2567 -1.1486 -4.0097 9 1 1.5582 -2.4591 -4.0142 10 1 3.7251 -1.3704 -4.0108 11 1 1.8709 -0.3785 -5.2193 12 6 2.0400 -0.7212 1.2492 13 6 1.4300 -0.0763 2.4953 14 6 2.2412 1.1147 3.0323 15 6 1.9380 0.5838 4.4433 16 6 1.7838 -0.8055 3.8022 17 1 -0.3633 -1.0209 0.1175 18 1 -0.3633 0.6123 0.8255 19 1 -0.3634 0.4088 -0.9428 20 1 2.9703 1.4236 -0.0004 21 1 0.9771 1.4995 -1.8047 22 1 1.7516 -1.7715 1.2055 23 1 3.1264 -0.6444 1.2951 24 1 0.3658 0.1324 2.3860 25 1 3.2984 1.0769 2.7694 26 1 1.7863 2.0828 2.8229 27 1 1.0129 0.9742 4.8673 28 1 2.7828 0.6571 5.1283 29 1 0.9594 -1.3874 4.2144 30 1 2.7150 -1.3693 3.7493 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229766851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:29 Heat of formation + Delta-G solvation = -69.750906 kcal Electronic energy + Delta-G solvation = -11816.776014 eV Core-core repulsion = 9804.220949 eV Total energy + Delta-G solvation = -2012.555065 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.20018 -38.01814 -34.18164 -32.52909 -28.64736 -27.14405 -26.39183 -24.14184 -21.37012 -20.19455 -19.23563 -17.27976 -16.29290 -15.64517 -15.44442 -15.31486 -14.81809 -13.99692 -13.59476 -13.26806 -13.03661 -12.87677 -12.73120 -12.47349 -12.06093 -11.98337 -11.94618 -11.37353 -11.32280 -10.90616 -10.79503 -10.50667 -9.81152 -8.39789 -6.32059 1.53110 1.59712 1.79352 2.60139 3.24204 3.74810 3.84866 3.88911 4.00416 4.09960 4.50376 4.59231 4.70162 4.79196 4.90878 4.94254 4.96588 5.05387 5.10654 5.17457 5.24842 5.34749 5.54420 5.66732 5.82381 6.02031 6.29321 6.75325 7.27801 7.63856 8.91980 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.077396 B = 0.011072 C = 0.010679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.687077 B = 2528.250331 C = 2621.295370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.223 3.777 3 O -0.582 6.582 4 C -0.655 4.655 5 H 0.040 0.960 6 C -0.012 4.012 7 N -0.926 5.926 8 Si 1.104 2.896 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.287 1.287 12 C -0.107 4.107 13 C -0.113 4.113 14 C -0.128 4.128 15 C -0.131 4.131 16 C -0.135 4.135 17 H 0.053 0.947 18 H 0.044 0.956 19 H 0.029 0.971 20 H 0.358 0.642 21 H 0.282 0.718 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -2.650 10.210 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.184 3.816 3 O -0.387 6.387 4 C -0.692 4.692 5 H 0.058 0.942 6 C -0.215 4.215 7 N -0.564 5.564 8 Si 0.927 3.073 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.213 1.213 12 C -0.145 4.145 13 C -0.131 4.131 14 C -0.166 4.166 15 C -0.168 4.168 16 C -0.172 4.172 17 H 0.072 0.928 18 H 0.063 0.937 19 H 0.048 0.952 20 H 0.203 0.797 21 H 0.095 0.905 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.129 -2.490 8.600 9.025 hybrid contribution 0.556 -0.117 1.321 1.438 sum 1.686 -2.607 9.921 10.395 Atomic orbital electron populations 1.21647 0.96866 0.99724 0.99498 1.18983 0.91081 0.79663 0.91841 1.86334 1.24931 1.30334 1.97128 1.22796 1.40368 1.11649 0.94430 0.94198 1.26966 0.93470 0.96881 1.04187 1.70713 1.38219 1.11996 1.35452 0.83120 0.76845 0.74573 0.72713 1.20053 1.19852 1.21253 1.21954 0.98936 0.98749 0.94875 1.22577 0.99456 0.97422 0.93638 1.22829 0.99683 0.97488 0.96557 1.22792 1.02232 0.96002 0.95812 1.22956 1.01783 0.96796 0.95652 0.92838 0.93692 0.95160 0.79656 0.90461 0.93262 0.93370 0.90501 0.90890 0.92905 0.89739 0.90323 0.91060 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 7.92 71.98 0.57 -5.25 16 2 C 0.22 11.01 0.65 -11.54 -0.01 11.01 16 3 O -0.58 -29.13 10.15 -148.98 -1.51 -30.64 16 4 C -0.65 -36.51 8.18 25.60 0.21 -36.30 16 5 H 0.04 2.22 7.75 -2.91 -0.02 2.19 16 6 C -0.01 -0.69 5.16 84.65 0.44 -0.25 16 7 N -0.93 -56.79 12.72 21.45 0.27 -56.52 16 8 Si 1.10 50.54 29.91 68.60 2.05 52.59 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 C -0.11 -4.39 4.28 30.59 0.13 -4.26 16 13 C -0.11 -3.83 3.32 -10.27 -0.03 -3.86 16 14 C -0.13 -3.94 7.00 31.12 0.22 -3.73 16 15 C -0.13 -3.19 8.08 31.12 0.25 -2.94 16 16 C -0.13 -3.60 7.64 31.12 0.24 -3.36 16 17 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 18 H 0.04 1.97 6.43 -2.38 -0.02 1.96 16 19 H 0.03 1.63 6.11 -2.39 -0.01 1.61 16 20 H 0.36 16.58 9.04 -74.06 -0.67 15.91 16 21 H 0.28 17.58 4.99 -92.71 -0.46 17.12 16 22 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.05 1.94 7.84 -2.38 -0.02 1.92 16 24 H 0.08 2.77 5.97 -2.39 -0.01 2.75 16 25 H 0.07 2.24 7.90 -2.39 -0.02 2.22 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.08 2.07 8.10 -2.39 -0.02 2.05 16 Total: -1.00 -62.65 239.31 3.57 -59.07 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.75 Total: 24.44 kcal Atomic # 6 Polarization: -50.95 SS G_CDS: 2.01 Total: -48.94 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.27 Total: -56.52 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.51 Total: -30.64 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.05 Total: 52.59 kcal Total: -62.65 3.57 -59.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229766851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.679 kcal (2) G-P(sol) polarization free energy of solvation -62.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds