Wall clock time and date at job start Mon Mar 30 2020 02:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46765 * 124.34977 * 2 1 4 4 C 1.54486 * 105.47318 * 197.02004 * 3 2 1 5 5 C 1.54629 * 101.76286 * 334.58239 * 4 3 2 6 6 H 1.08991 * 110.48662 * 265.98718 * 5 4 3 7 7 N 1.46506 * 110.48406 * 143.47653 * 5 4 3 8 8 C 1.36936 * 119.99701 * 154.99919 * 7 5 4 9 9 H 1.07997 * 120.00429 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99686 * 180.02562 * 8 7 5 11 11 N 1.31615 * 119.99798 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99987 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46673 * 90.00598 * 12 10 8 14 14 H 1.48494 * 109.47103 * 210.00156 * 12 10 8 15 15 H 1.48494 * 109.47302 * 330.00527 * 12 10 8 16 16 C 1.34420 * 124.34793 * 179.70699 * 2 1 3 17 17 O 1.21272 * 124.94435 * 359.56674 * 16 2 1 18 18 H 1.09002 * 109.47391 * 89.99821 * 1 2 3 19 19 H 1.09001 * 109.46813 * 329.99878 * 1 2 3 20 20 H 1.09004 * 109.47041 * 210.00005 * 1 2 3 21 21 H 1.09003 * 110.24413 * 316.02003 * 3 2 1 22 22 H 1.08997 * 110.24649 * 78.02141 * 3 2 1 23 23 H 1.08999 * 110.96975 * 92.70331 * 4 3 2 24 24 H 1.08998 * 110.96690 * 216.43024 * 4 3 2 25 25 H 0.97004 * 120.00098 * 335.00223 * 7 5 4 26 26 H 0.97003 * 119.99859 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7487 -0.4358 5 6 3.6898 -0.7378 -0.0102 6 1 4.1216 -0.8533 0.9838 7 7 4.4194 -1.5551 -0.9829 8 6 4.9757 -2.7453 -0.5968 9 1 4.8770 -3.0814 0.4249 10 6 5.6674 -3.5195 -1.5183 11 7 6.2016 -4.6637 -1.1473 12 14 5.8387 -2.9380 -3.2852 13 1 7.0711 -2.1204 -3.4199 14 1 5.9241 -4.1143 -4.1874 15 1 4.6573 -2.1168 -3.6528 16 6 2.2234 -1.1098 0.0057 17 8 1.7946 -2.2441 0.0190 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 0.8900 0.5139 20 1 -0.3633 -0.8900 0.5139 21 1 1.8983 1.9383 -0.7102 22 1 2.3307 1.6429 1.0004 23 1 3.8269 0.8448 -1.5142 24 1 4.4754 1.3014 0.0961 25 1 4.5084 -1.2532 -1.9004 26 1 6.6847 -5.2048 -1.7913 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230262079.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:21 Heat of formation + Delta-G solvation = -39.444565 kcal Electronic energy + Delta-G solvation = -11321.676913 eV Core-core repulsion = 9206.895686 eV Total energy + Delta-G solvation = -2114.781227 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.23318 -37.38104 -36.48125 -33.87670 -31.88200 -28.09196 -27.40656 -24.68896 -22.66847 -20.36619 -19.84127 -17.60270 -17.47390 -16.73109 -16.24070 -15.24538 -14.87211 -14.66541 -14.50853 -14.21839 -13.42016 -13.32052 -12.97680 -12.92850 -12.35881 -12.27250 -11.94360 -11.74459 -11.54082 -10.69754 -9.59698 -9.35100 -8.05354 -5.41914 1.33662 1.40883 1.46131 1.67994 2.20414 2.45727 3.23790 3.47026 3.75221 3.82446 4.21304 4.24345 4.45902 4.54969 4.76748 4.77354 4.86140 5.12865 5.22514 5.66748 5.76742 6.16310 6.19267 7.00093 7.34706 7.70289 7.90877 9.16442 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.057674 B = 0.012442 C = 0.011667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.374182 B = 2249.851277 C = 2399.306876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.630 5.630 3 C 0.110 3.890 4 C -0.127 4.127 5 C 0.139 3.861 6 H 0.087 0.913 7 N -0.727 5.727 8 C -0.235 4.235 9 H 0.048 0.952 10 C -0.065 4.065 11 N -0.983 5.983 12 Si 0.963 3.037 13 H -0.262 1.262 14 H -0.296 1.296 15 H -0.258 1.258 16 C 0.472 3.528 17 O -0.584 6.584 18 H 0.056 0.944 19 H 0.109 0.891 20 H 0.048 0.952 21 H 0.108 0.892 22 H 0.098 0.902 23 H 0.085 0.915 24 H 0.122 0.878 25 H 0.371 0.629 26 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 18.421 -0.007 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.366 5.366 3 C -0.012 4.012 4 C -0.165 4.165 5 C 0.026 3.974 6 H 0.105 0.895 7 N -0.370 5.370 8 C -0.366 4.366 9 H 0.066 0.934 10 C -0.256 4.256 11 N -0.633 5.633 12 Si 0.789 3.211 13 H -0.187 1.187 14 H -0.223 1.223 15 H -0.183 1.183 16 C 0.258 3.742 17 O -0.463 6.463 18 H 0.075 0.925 19 H 0.127 0.873 20 H 0.067 0.933 21 H 0.126 0.874 22 H 0.117 0.883 23 H 0.103 0.897 24 H 0.140 0.860 25 H 0.206 0.794 26 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.543 17.673 0.138 19.630 hybrid contribution 0.059 -0.757 -0.853 1.143 sum -8.484 16.915 -0.715 18.937 Atomic orbital electron populations 1.21652 0.77732 1.03500 1.02102 1.48505 1.07114 1.07831 1.73126 1.22337 0.88789 0.86063 1.04015 1.22940 0.98442 0.91765 1.03386 1.21266 0.87332 0.93093 0.95695 0.89533 1.42516 1.63106 1.22166 1.09217 1.18980 1.25218 0.96505 0.95866 0.93360 1.25610 1.00354 0.96622 1.03045 1.69907 1.42309 1.14994 1.36111 0.85310 0.79014 0.77506 0.79268 1.18676 1.22313 1.18293 1.23103 0.92574 0.84347 0.74205 1.90616 1.79790 1.24222 1.51658 0.92512 0.87250 0.93330 0.87368 0.88342 0.89655 0.85963 0.79401 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.07 10.97 127.77 1.40 3.47 15 2 N -0.63 -17.99 3.33 -842.87 -2.81 -20.80 15 3 C 0.11 1.97 7.35 86.83 0.64 2.61 15 4 C -0.13 -2.95 6.87 31.65 0.22 -2.73 15 5 C 0.14 5.38 3.57 44.99 0.16 5.54 15 6 H 0.09 3.44 8.09 -2.39 -0.02 3.42 15 7 N -0.73 -35.54 4.99 -322.95 -1.61 -37.15 15 8 C -0.23 -14.32 10.44 84.03 0.88 -13.44 15 9 H 0.05 3.29 8.06 -2.91 -0.02 3.27 15 10 C -0.07 -4.03 5.50 84.86 0.47 -3.57 15 11 N -0.98 -65.99 13.97 21.65 0.30 -65.69 15 12 Si 0.96 46.86 27.74 68.60 1.90 48.76 15 13 H -0.26 -11.80 7.11 99.48 0.71 -11.09 15 14 H -0.30 -14.68 7.11 99.48 0.71 -13.97 15 15 H -0.26 -11.51 6.52 99.48 0.65 -10.86 15 16 C 0.47 19.75 7.67 87.90 0.67 20.42 15 17 O -0.58 -31.70 17.58 -3.01 -0.05 -31.75 15 18 H 0.06 1.21 8.14 -2.39 -0.02 1.19 15 19 H 0.11 1.49 8.14 -2.39 -0.02 1.47 15 20 H 0.05 1.32 7.92 -2.38 -0.02 1.30 15 21 H 0.11 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.10 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.08 1.93 7.82 -2.39 -0.02 1.92 15 24 H 0.12 2.11 8.14 -2.39 -0.02 2.09 15 25 H 0.37 16.92 5.48 -92.71 -0.51 16.41 15 26 H 0.26 16.42 8.31 -92.71 -0.77 15.65 15 Total: -1.00 -83.84 227.10 2.77 -81.06 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.61 Total: 13.27 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 4.44 Total: 12.29 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -4.12 Total: -123.64 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.05 Total: -31.75 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.90 Total: 48.76 kcal Total: -83.84 2.77 -81.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230262079.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.619 kcal (2) G-P(sol) polarization free energy of solvation -83.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds