Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00153 * 2 1 4 4 H 1.09001 * 110.00792 * 29.84080 * 3 2 1 5 5 C 1.51447 * 109.98719 * 268.54497 * 3 2 1 6 6 O 1.20764 * 126.33576 * 60.56034 * 5 3 2 7 7 C 1.51844 * 107.32222 * 240.29423 * 5 3 2 8 8 C 1.54889 * 104.42785 * 23.79250 * 7 5 3 9 9 C 1.54282 * 109.98523 * 151.12966 * 3 2 1 10 10 H 1.09004 * 110.57186 * 214.79212 * 9 3 2 11 11 C 1.50698 * 110.69560 * 337.59895 * 9 3 2 12 12 H 1.07997 * 120.00040 * 359.25645 * 11 9 3 13 13 C 1.37874 * 119.99929 * 179.25491 * 11 9 3 14 14 N 1.31517 * 120.00354 * 6.89085 * 13 11 9 15 15 Si 1.86799 * 119.99948 * 186.89470 * 13 11 9 16 16 H 1.48502 * 109.47423 * 94.85625 * 15 13 11 17 17 H 1.48501 * 109.47065 * 214.85388 * 15 13 11 18 18 H 1.48498 * 109.47272 * 334.85583 * 15 13 11 19 19 H 1.09007 * 109.47388 * 59.99855 * 1 2 3 20 20 H 1.08994 * 109.47470 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47347 * 300.00153 * 1 2 3 22 22 H 1.08995 * 110.43977 * 142.52293 * 7 5 3 23 23 H 1.08994 * 110.44334 * 264.92907 * 7 5 3 24 24 H 1.09000 * 110.83917 * 80.58416 * 8 7 5 25 25 H 1.09002 * 110.82909 * 204.16616 * 8 7 5 26 26 H 0.96996 * 119.99939 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3503 2.0075 0.5096 5 6 2.2538 1.7636 -1.4228 6 8 1.4162 1.9124 -2.2799 7 6 3.7452 2.0076 -1.5701 8 6 4.3906 1.1284 -0.4703 9 6 3.3846 1.2706 0.7001 10 1 3.5602 2.1979 1.2455 11 6 3.4802 0.0865 1.6273 12 1 2.6419 -0.5861 1.7323 13 6 4.6380 -0.1381 2.3414 14 7 5.6072 0.7506 2.3194 15 14 4.8301 -1.7049 3.3403 16 1 5.5484 -2.7225 2.5317 17 1 5.6059 -1.4142 4.5727 18 1 3.4888 -2.2235 3.7105 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 4.0865 1.6946 -2.5568 23 1 3.9771 3.0596 -1.4040 24 1 4.4623 0.0907 -0.7959 25 1 5.3697 1.5162 -0.1891 26 1 6.4215 0.5927 2.8221 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238387570.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = -88.656750 kcal Electronic energy + Delta-G solvation = -11493.701902 eV Core-core repulsion = 9344.493923 eV Total energy + Delta-G solvation = -2149.207978 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.34857 -36.73149 -34.86308 -32.11975 -28.18670 -26.56024 -25.26988 -23.57517 -19.86828 -18.84085 -16.80252 -15.86834 -15.26347 -14.99560 -14.33758 -14.01587 -13.70920 -13.09992 -12.60336 -12.11311 -11.58801 -11.30140 -10.92076 -10.87063 -10.56483 -10.25602 -10.04013 -9.85695 -9.43843 -8.89844 -8.36911 -8.21931 -6.01586 -3.99455 2.37347 3.34232 3.41299 3.45840 4.47007 4.59420 4.88253 5.26126 5.43996 5.70781 5.84756 5.87585 5.93497 6.01448 6.10470 6.33790 6.45645 6.91900 7.03245 7.44601 7.61676 7.88370 7.99577 8.02731 8.44042 9.06284 9.63617 11.09450 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.048747 B = 0.014911 C = 0.012069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.255115 B = 1877.364515 C = 2319.372772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.341 6.341 3 C 0.036 3.964 4 H 0.071 0.929 5 C 0.352 3.648 6 O -0.466 6.466 7 C -0.187 4.187 8 C -0.098 4.098 9 C 0.053 3.947 10 H 0.052 0.948 11 C -0.497 4.497 12 H 0.072 0.928 13 C 0.060 3.940 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.274 1.274 19 H 0.037 0.963 20 H 0.079 0.921 21 H 0.037 0.963 22 H 0.077 0.923 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 1.131 -3.282 5.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C -0.022 4.022 4 H 0.088 0.912 5 C 0.228 3.772 6 O -0.341 6.341 7 C -0.225 4.225 8 C -0.137 4.137 9 C 0.035 3.965 10 H 0.070 0.930 11 C -0.536 4.536 12 H 0.090 0.910 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.721 3.279 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.199 1.199 19 H 0.055 0.945 20 H 0.097 0.903 21 H 0.056 0.944 22 H 0.095 0.905 23 H 0.112 0.888 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.353 1.067 -3.649 5.780 hybrid contribution 0.048 -0.585 0.549 0.804 sum -4.305 0.482 -3.100 5.327 Atomic orbital electron populations 1.22815 0.83219 1.01963 0.99454 1.88173 1.17651 1.25622 1.94404 1.23603 0.99890 0.85400 0.93341 0.91168 1.26172 0.91337 0.69757 0.89907 1.90284 1.53581 1.41711 1.48484 1.22992 0.94668 1.02676 1.02155 1.22502 1.00346 0.97617 0.93196 1.19606 0.85172 0.99237 0.92524 0.93037 1.21019 1.00064 1.09631 1.22843 0.90971 1.24966 0.96176 0.96479 0.96503 1.69954 1.06863 1.33964 1.42705 0.86572 0.78086 0.83882 0.79404 1.20818 1.21527 1.19882 0.94484 0.90296 0.94444 0.90478 0.88756 0.92099 0.90366 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.84 101.05 1.10 1.48 15 2 O -0.34 -7.42 8.47 -35.23 -0.30 -7.72 15 3 C 0.04 0.77 3.17 -26.85 -0.09 0.68 15 4 H 0.07 1.37 7.82 -51.93 -0.41 0.96 15 5 C 0.35 7.07 7.53 -28.10 -0.21 6.86 15 6 O -0.47 -9.96 17.72 6.00 0.11 -9.85 15 7 C -0.19 -3.43 6.72 -26.32 -0.18 -3.61 15 8 C -0.10 -2.16 5.86 -24.68 -0.14 -2.30 15 9 C 0.05 1.26 2.68 -90.05 -0.24 1.02 15 10 H 0.05 1.28 8.14 -51.93 -0.42 0.85 15 11 C -0.50 -13.29 8.14 -34.44 -0.28 -13.57 15 12 H 0.07 1.97 6.56 -52.49 -0.34 1.63 15 13 C 0.06 1.61 5.29 -17.82 -0.09 1.52 15 14 N -0.90 -24.84 12.62 55.43 0.70 -24.14 15 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 19 H 0.04 0.62 7.87 -51.93 -0.41 0.21 15 20 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.04 0.59 8.10 -51.93 -0.42 0.17 15 22 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.09 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.06 1.40 8.05 -51.93 -0.42 0.98 15 25 H 0.08 1.79 7.78 -51.93 -0.40 1.38 15 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 LS Contribution 226.96 15.07 3.42 3.42 Total: -1.00 -28.84 226.96 -4.46 -33.31 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -3.23 Total: -3.26 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.14 Total: -7.91 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.70 Total: -24.14 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.19 Total: -17.57 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.84 -4.46 -33.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238387570.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.352 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds