Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00153 * 2 1 4 4 H 1.09001 * 110.00792 * 29.84080 * 3 2 1 5 5 C 1.51447 * 109.98719 * 268.54497 * 3 2 1 6 6 O 1.20764 * 126.33576 * 60.56034 * 5 3 2 7 7 C 1.51844 * 107.32222 * 240.29423 * 5 3 2 8 8 C 1.54889 * 104.42785 * 23.79250 * 7 5 3 9 9 C 1.54282 * 109.98523 * 151.12966 * 3 2 1 10 10 H 1.09004 * 110.57186 * 214.79212 * 9 3 2 11 11 C 1.50698 * 110.69560 * 337.59895 * 9 3 2 12 12 H 1.07997 * 120.00040 * 359.25645 * 11 9 3 13 13 C 1.37874 * 119.99929 * 179.25491 * 11 9 3 14 14 N 1.31517 * 120.00354 * 6.89085 * 13 11 9 15 15 Si 1.86799 * 119.99948 * 186.89470 * 13 11 9 16 16 H 1.48502 * 109.47423 * 94.85625 * 15 13 11 17 17 H 1.48501 * 109.47065 * 214.85388 * 15 13 11 18 18 H 1.48498 * 109.47272 * 334.85583 * 15 13 11 19 19 H 1.09007 * 109.47388 * 59.99855 * 1 2 3 20 20 H 1.08994 * 109.47470 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47347 * 300.00153 * 1 2 3 22 22 H 1.08995 * 110.43977 * 142.52293 * 7 5 3 23 23 H 1.08994 * 110.44334 * 264.92907 * 7 5 3 24 24 H 1.09000 * 110.83917 * 80.58416 * 8 7 5 25 25 H 1.09002 * 110.82909 * 204.16616 * 8 7 5 26 26 H 0.96996 * 119.99939 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3503 2.0075 0.5096 5 6 2.2538 1.7636 -1.4228 6 8 1.4162 1.9124 -2.2799 7 6 3.7452 2.0076 -1.5701 8 6 4.3906 1.1284 -0.4703 9 6 3.3846 1.2706 0.7001 10 1 3.5602 2.1979 1.2455 11 6 3.4802 0.0865 1.6273 12 1 2.6419 -0.5861 1.7323 13 6 4.6380 -0.1381 2.3414 14 7 5.6072 0.7506 2.3194 15 14 4.8301 -1.7049 3.3403 16 1 5.5484 -2.7225 2.5317 17 1 5.6059 -1.4142 4.5727 18 1 3.4888 -2.2235 3.7105 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 4.0865 1.6946 -2.5568 23 1 3.9771 3.0596 -1.4040 24 1 4.4623 0.0907 -0.7959 25 1 5.3697 1.5162 -0.1891 26 1 6.4215 0.5927 2.8221 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238387570.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = -106.895361 kcal Electronic energy + Delta-G solvation = -11494.492787 eV Core-core repulsion = 9344.493923 eV Total energy + Delta-G solvation = -2149.998864 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.98466 -38.36255 -36.57869 -34.09389 -29.88613 -28.26938 -26.78882 -25.45912 -21.64985 -20.44835 -18.63956 -17.51720 -17.08259 -16.71666 -16.08005 -15.61068 -15.28651 -14.63854 -14.41158 -13.86947 -13.25289 -13.07971 -12.73029 -12.57076 -12.30782 -12.05007 -11.68897 -11.52505 -11.23257 -10.84548 -10.41065 -9.83825 -8.06964 -6.09416 0.78629 1.45459 1.48258 1.57497 2.50362 3.05606 3.23949 3.32733 3.77944 4.14195 4.27406 4.44490 4.53108 4.57820 4.74866 4.80861 4.87571 5.11534 5.25850 5.63386 5.79110 5.94333 6.21629 6.41522 6.54936 6.98558 7.55776 9.03286 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.048747 B = 0.014911 C = 0.012069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.255115 B = 1877.364515 C = 2319.372772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.370 6.370 3 C 0.038 3.962 4 H 0.083 0.917 5 C 0.359 3.641 6 O -0.477 6.477 7 C -0.172 4.172 8 C -0.091 4.091 9 C 0.043 3.957 10 H 0.037 0.963 11 C -0.510 4.510 12 H 0.062 0.938 13 C 0.015 3.985 14 N -0.920 5.920 15 Si 0.947 3.053 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 H 0.040 0.960 20 H 0.099 0.901 21 H 0.049 0.951 22 H 0.099 0.901 23 H 0.121 0.879 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 1.048 -3.703 6.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.289 6.289 3 C -0.021 4.021 4 H 0.101 0.899 5 C 0.236 3.764 6 O -0.353 6.353 7 C -0.210 4.210 8 C -0.130 4.130 9 C 0.025 3.975 10 H 0.055 0.945 11 C -0.548 4.548 12 H 0.080 0.920 13 C -0.183 4.183 14 N -0.560 5.560 15 Si 0.774 3.226 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.197 1.197 19 H 0.059 0.941 20 H 0.117 0.883 21 H 0.067 0.933 22 H 0.118 0.882 23 H 0.139 0.861 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.805 0.983 -4.071 6.374 hybrid contribution 0.132 -0.564 0.696 0.906 sum -4.673 0.419 -3.375 5.780 Atomic orbital electron populations 1.23019 0.80906 1.03656 1.00194 1.88108 1.20228 1.25937 1.94610 1.23487 0.98763 0.85790 0.94068 0.89887 1.26110 0.91976 0.69191 0.89121 1.90289 1.54062 1.42453 1.48466 1.22897 0.92785 1.03447 1.01827 1.22262 0.99489 0.97353 0.93874 1.19557 0.87648 0.97416 0.92883 0.94530 1.21265 0.99737 1.10365 1.23406 0.92029 1.25602 0.96107 0.98916 0.97665 1.70038 1.07178 1.35207 1.43538 0.85714 0.77938 0.80791 0.78192 1.20644 1.21149 1.19677 0.94093 0.88252 0.93250 0.88219 0.86119 0.93794 0.91714 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 10.84 113.37 1.23 1.83 15 2 O -0.37 -15.72 8.47 -148.98 -1.26 -16.98 15 3 C 0.04 1.55 3.17 30.52 0.10 1.64 15 4 H 0.08 3.13 7.82 -2.39 -0.02 3.11 15 5 C 0.36 13.68 7.53 29.71 0.22 13.91 15 6 O -0.48 -19.30 17.72 -1.46 -0.03 -19.33 15 7 C -0.17 -5.90 6.72 30.86 0.21 -5.69 15 8 C -0.09 -3.95 5.86 31.92 0.19 -3.76 15 9 C 0.04 2.05 2.68 -10.43 -0.03 2.02 15 10 H 0.04 1.82 8.14 -2.39 -0.02 1.80 15 11 C -0.51 -27.25 8.14 25.60 0.21 -27.04 15 12 H 0.06 3.36 6.56 -2.91 -0.02 3.35 15 13 C 0.02 0.83 5.29 84.65 0.45 1.28 15 14 N -0.92 -51.11 12.62 21.45 0.27 -50.84 15 15 Si 0.95 43.32 29.54 68.60 2.03 45.35 15 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 17 H -0.29 -12.81 7.11 99.48 0.71 -12.11 15 18 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 19 H 0.04 1.29 7.87 -2.38 -0.02 1.27 15 20 H 0.10 2.77 8.14 -2.39 -0.02 2.75 15 21 H 0.05 1.47 8.10 -2.39 -0.02 1.45 15 22 H 0.10 3.03 8.14 -2.39 -0.02 3.01 15 23 H 0.12 3.56 8.14 -2.39 -0.02 3.54 15 24 H 0.04 2.01 8.05 -2.39 -0.02 1.99 15 25 H 0.06 2.94 7.78 -2.39 -0.02 2.92 15 26 H 0.26 13.84 8.31 -92.71 -0.77 13.07 15 Total: -1.00 -59.71 226.96 4.74 -54.97 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.16 Total: 2.64 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 2.57 Total: -15.80 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.27 Total: -50.84 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.29 Total: -36.31 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -59.71 4.74 -54.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238387570.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.923 kcal (2) G-P(sol) polarization free energy of solvation -59.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds