Wall clock time and date at job start Mon Mar 30 2020 01:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 119.99513 * 2 1 4 4 H 1.48499 * 109.47191 * 269.99832 * 3 2 1 5 5 H 1.48496 * 109.47314 * 29.99902 * 3 2 1 6 6 H 1.48496 * 109.47014 * 149.99984 * 3 2 1 7 7 C 1.40049 * 120.00615 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00203 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99566 * 0.02562 * 7 2 1 10 10 O 1.21688 * 120.00307 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99841 * 180.02562 * 9 7 2 12 12 C 1.46502 * 119.99946 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.46970 * 179.97438 * 12 11 9 14 14 C 1.53515 * 114.16965 * 185.00003 * 13 12 11 15 15 N 1.47481 * 87.93334 * 220.32733 * 14 13 12 16 16 C 1.47488 * 87.83530 * 27.00963 * 15 14 13 17 17 H 0.96993 * 120.00557 * 0.02562 * 1 2 3 18 18 H 0.96996 * 119.99991 * 359.97438 * 11 9 7 19 19 H 1.08997 * 109.47069 * 59.99633 * 12 11 9 20 20 H 1.08992 * 109.46904 * 299.99556 * 12 11 9 21 21 H 1.09002 * 113.38857 * 318.07838 * 13 12 11 22 22 H 1.09004 * 113.47747 * 105.56637 * 14 13 12 23 23 H 1.08995 * 113.53124 * 335.10698 * 14 13 12 24 24 H 1.00901 * 110.99857 * 138.69928 * 15 14 13 25 25 H 1.08996 * 113.47304 * 87.75121 * 16 15 14 26 26 H 1.08997 * 113.47652 * 218.22256 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5381 1.4404 0.7000 7 6 2.0071 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0001 9 6 1.2752 -2.4804 0.0005 10 8 0.0584 -2.4805 0.0005 11 7 1.9492 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0022 13 6 2.2110 -6.0792 0.0027 14 6 1.5591 -7.4637 -0.1188 15 7 2.5330 -7.9506 0.8759 16 6 2.5980 -6.5747 1.4032 17 1 -0.4850 0.8399 -0.0004 18 1 2.9192 -3.6476 0.0020 19 1 0.5904 -4.9747 -0.8880 20 1 0.5899 -4.9736 0.8919 21 1 3.0580 -5.9246 -0.6658 22 1 1.6807 -7.9162 -1.1030 23 1 0.5280 -7.4916 0.2333 24 1 2.0933 -8.5714 1.5388 25 1 1.8442 -6.3644 2.1618 26 1 3.6001 -6.2737 1.7088 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257865789.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:30 Heat of formation + Delta-G solvation = -12.268084 kcal Electronic energy + Delta-G solvation = -10906.272858 eV Core-core repulsion = 8792.670091 eV Total energy + Delta-G solvation = -2113.602766 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.58744 -37.03432 -33.23957 -32.22886 -28.84591 -26.18868 -25.72072 -23.40699 -19.76583 -19.41253 -17.33525 -15.94266 -15.63388 -15.23085 -14.33526 -13.89555 -13.68828 -13.04454 -12.43672 -12.27319 -11.65019 -11.22495 -11.10558 -10.92412 -10.77364 -10.40685 -10.24678 -10.18279 -9.02580 -8.83780 -7.60187 -7.47679 -6.17119 -4.62542 3.15204 3.21881 3.25431 4.11182 4.26483 4.46873 4.60979 4.83287 5.22284 5.36491 5.50489 5.69631 5.75397 5.81550 5.85203 6.02804 6.09162 6.49067 6.60890 7.20767 7.44865 7.95352 8.12192 8.34963 9.04006 9.56025 10.61772 10.80357 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.097664 B = 0.008281 C = 0.007861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 286.629474 B = 3380.370565 C = 3561.160082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.553 3.447 10 O -0.583 6.583 11 N -0.767 5.767 12 C 0.143 3.857 13 C -0.123 4.123 14 C 0.007 3.993 15 N -0.633 5.633 16 C 0.005 3.995 17 H 0.268 0.732 18 H 0.381 0.619 19 H 0.051 0.949 20 H 0.048 0.952 21 H 0.103 0.897 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.316 0.684 25 H 0.068 0.932 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 -8.876 1.199 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.466 6.466 11 N -0.422 5.422 12 C 0.017 3.983 13 C -0.142 4.142 14 C -0.124 4.124 15 N -0.257 5.257 16 C -0.125 4.125 17 H 0.079 0.921 18 H 0.212 0.788 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.121 0.879 22 H 0.101 0.899 23 H 0.086 0.914 24 H 0.127 0.873 25 H 0.086 0.914 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.393 -8.969 0.798 10.019 hybrid contribution 0.027 0.921 0.516 1.056 sum 4.420 -8.048 1.314 9.276 Atomic orbital electron populations 1.70019 1.07078 1.27229 1.35479 1.25711 0.94606 1.00293 0.92609 0.86372 0.80146 0.81403 0.78816 1.19754 1.20484 1.18912 1.20898 0.93598 0.89439 1.54375 0.91416 1.18236 0.87207 0.82524 0.76326 1.90593 1.14138 1.86933 1.54935 1.46109 1.08549 1.04822 1.82743 1.20830 0.93371 0.83474 1.00607 1.23009 0.99650 0.94053 0.97465 1.23576 0.95405 0.94999 0.98422 1.67322 1.38059 1.07432 1.12872 1.23683 1.02307 0.89621 0.96878 0.92135 0.78813 0.93090 0.93418 0.87903 0.89882 0.91416 0.87255 0.91414 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.33 11.83 55.55 0.66 -22.67 15 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 15 3 Si 0.91 20.26 29.56 -169.99 -5.02 15.24 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.55 -15.60 9.54 -35.63 -0.34 -15.94 15 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 15 9 C 0.55 15.99 7.75 -12.99 -0.10 15.88 15 10 O -0.58 -19.19 15.02 5.20 0.08 -19.11 15 11 N -0.77 -17.29 5.55 -61.73 -0.34 -17.64 15 12 C 0.14 2.73 5.58 -4.04 -0.02 2.71 15 13 C -0.12 -1.78 4.09 -90.09 -0.37 -2.15 15 14 C 0.01 0.09 8.20 -7.54 -0.06 0.02 15 15 N -0.63 -7.82 8.71 -122.62 -1.07 -8.89 15 16 C 0.01 0.07 8.19 -7.53 -0.06 0.01 15 17 H 0.27 7.35 8.29 -40.82 -0.34 7.01 15 18 H 0.38 7.54 8.45 -40.82 -0.35 7.20 15 19 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.05 0.96 7.81 -51.93 -0.41 0.56 15 21 H 0.10 1.48 8.14 -51.93 -0.42 1.06 15 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.07 0.80 8.10 -51.93 -0.42 0.37 15 24 H 0.32 3.28 8.91 -39.29 -0.35 2.93 15 25 H 0.07 0.89 7.87 -51.93 -0.41 0.48 15 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 LS Contribution 230.70 15.07 3.48 3.48 Total: -1.00 -34.00 230.70 -6.44 -40.45 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.17 Total: 6.24 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.05 Total: 2.90 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.75 Total: -49.19 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.08 Total: -19.11 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -34.00 -6.44 -40.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257865789.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.177 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds