Wall clock time and date at job start Mon Mar 30 2020 01:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99907 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48513 * 109.47252 * 300.00009 * 3 2 1 6 6 H 1.48503 * 109.47413 * 59.99761 * 3 2 1 7 7 C 1.40043 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00458 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99620 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00307 * 179.72666 * 9 7 2 12 12 C 1.47424 * 125.64883 * 0.29415 * 11 9 7 13 13 C 1.54905 * 104.83094 * 155.83950 * 12 11 9 14 14 C 1.55155 * 101.58559 * 37.00848 * 13 12 11 15 15 C 1.47024 * 125.64632 * 179.97438 * 11 9 7 16 16 H 1.09003 * 109.87748 * 300.50312 * 15 11 9 17 17 N 1.46897 * 109.88367 * 61.67264 * 15 11 9 18 18 H 0.96998 * 119.99723 * 0.02562 * 1 2 3 19 19 H 1.09001 * 110.36740 * 274.67728 * 12 11 9 20 20 H 1.09004 * 110.36404 * 36.88566 * 12 11 9 21 21 H 1.09000 * 111.00209 * 155.08370 * 13 12 11 22 22 H 1.09001 * 111.00117 * 278.92983 * 13 12 11 23 23 H 1.09003 * 110.71852 * 82.85580 * 14 13 12 24 24 H 1.08998 * 110.72145 * 206.13366 * 14 13 12 25 25 H 1.00898 * 110.99916 * 298.54396 * 17 15 11 26 26 H 1.00895 * 110.99842 * 62.50212 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2126 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9491 -3.6477 -0.0045 12 6 3.4162 -3.7928 -0.0042 13 6 3.6759 -5.1943 0.6023 14 6 2.4962 -6.0122 0.0133 15 6 1.3428 -4.9871 -0.0046 16 1 0.7196 -5.1119 0.8810 17 7 0.5346 -5.1697 -1.2176 18 1 -0.4850 0.8401 -0.0004 19 1 3.8026 -3.7424 -1.0221 20 1 3.8736 -3.0196 0.6132 21 1 4.6334 -5.5934 0.2678 22 1 3.6256 -5.1644 1.6907 23 1 2.7294 -6.3537 -0.9953 24 1 2.2503 -6.8546 0.6597 25 1 -0.2184 -4.4992 -1.2546 26 1 1.1083 -5.1153 -2.0458 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257865894.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:10 Heat of formation + Delta-G solvation = -66.316298 kcal Electronic energy + Delta-G solvation = -11461.861253 eV Core-core repulsion = 9345.914780 eV Total energy + Delta-G solvation = -2115.946473 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.35008 -37.68261 -34.70529 -33.55244 -32.04969 -28.38145 -27.64753 -23.92790 -22.11065 -20.73415 -18.58315 -17.83036 -17.06087 -16.27247 -16.11647 -15.52490 -14.59520 -14.39537 -14.11743 -13.74697 -13.18995 -13.10609 -12.78190 -12.53521 -12.08275 -12.00778 -11.89507 -11.61234 -10.98979 -10.39083 -9.70842 -9.17573 -8.32500 -6.89693 1.36463 1.36773 1.54691 2.20399 2.40273 2.87455 3.49362 3.65110 3.79315 4.06986 4.19063 4.44836 4.66847 4.94305 4.95742 5.02752 5.15657 5.29202 5.37393 5.60203 5.92728 6.07504 6.38579 6.48644 6.82928 7.45402 8.41314 8.62397 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.060663 B = 0.013080 C = 0.011199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.454780 B = 2140.187839 C = 2499.644416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.248 1.248 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.551 3.449 10 O -0.628 6.628 11 N -0.674 5.674 12 C 0.105 3.895 13 C -0.120 4.120 14 C -0.105 4.105 15 C 0.290 3.710 16 H 0.044 0.956 17 N -0.836 5.836 18 H 0.275 0.725 19 H 0.055 0.945 20 H 0.059 0.941 21 H 0.113 0.887 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.336 0.664 26 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.741 -6.173 -0.394 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.171 1.171 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.604 4.604 8 H 0.102 0.898 9 C 0.358 3.642 10 O -0.515 6.515 11 N -0.416 5.416 12 C -0.019 4.019 13 C -0.158 4.158 14 C -0.143 4.143 15 C 0.096 3.904 16 H 0.062 0.938 17 N -0.367 5.367 18 H 0.085 0.915 19 H 0.074 0.926 20 H 0.077 0.923 21 H 0.132 0.868 22 H 0.091 0.909 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.149 0.851 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.700 -6.776 -0.093 11.028 hybrid contribution 0.069 1.804 -0.191 1.816 sum 8.769 -4.972 -0.284 10.085 Atomic orbital electron populations 1.70189 1.09465 1.28917 1.36346 1.26998 0.95565 1.04951 0.91222 0.84977 0.79311 0.75404 0.78645 1.17072 1.19212 1.19254 1.21468 0.94554 0.89985 1.54426 0.89794 1.18390 0.86435 0.83385 0.75995 1.90544 1.15808 1.87475 1.57660 1.49546 1.07624 1.05608 1.78780 1.22159 0.81394 0.98321 1.00003 1.22797 0.99446 0.92911 1.00627 1.22568 0.92398 0.96268 1.03092 1.22105 0.92825 0.83293 0.92202 0.93784 1.59476 1.15044 1.57139 1.05017 0.91541 0.92637 0.92255 0.86838 0.90883 0.89228 0.88634 0.85145 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.51 11.83 21.83 0.26 -50.25 15 2 C 0.03 1.56 5.50 85.30 0.47 2.03 15 3 Si 1.00 41.23 29.56 68.60 2.03 43.26 15 4 H -0.25 -9.48 7.11 99.48 0.71 -8.77 15 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 15 6 H -0.27 -10.64 7.11 99.48 0.71 -9.94 15 7 C -0.57 -32.67 8.98 24.83 0.22 -32.45 15 8 H 0.08 4.40 6.64 -2.91 -0.02 4.38 15 9 C 0.55 32.56 7.68 86.36 0.66 33.22 15 10 O -0.63 -42.20 14.18 -4.33 -0.06 -42.26 15 11 N -0.67 -31.22 3.21 -803.64 -2.58 -33.80 15 12 C 0.11 3.71 6.52 86.85 0.57 4.28 15 13 C -0.12 -3.01 7.08 31.98 0.23 -2.78 15 14 C -0.10 -2.83 6.62 31.78 0.21 -2.62 15 15 C 0.29 11.56 4.02 129.67 0.52 12.08 15 16 H 0.04 1.97 8.14 -2.39 -0.02 1.95 15 17 N -0.84 -33.05 9.42 -174.61 -1.65 -34.70 15 18 H 0.27 15.28 8.29 -92.71 -0.77 14.51 15 19 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.06 2.19 7.14 -2.38 -0.02 2.17 15 21 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.09 2.16 7.91 -2.39 -0.02 2.14 15 24 H 0.10 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.34 15.81 7.78 -89.70 -0.70 15.11 15 26 H 0.34 12.14 8.86 -89.70 -0.79 11.34 15 Total: -1.00 -73.78 223.26 0.59 -73.19 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.29 Total: 30.80 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 2.88 Total: 13.76 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -3.96 Total: -118.75 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.06 Total: -42.26 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -73.78 0.59 -73.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257865894.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.879 kcal (2) G-P(sol) polarization free energy of solvation -73.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds