Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48504 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47037 * 60.00334 * 3 2 1 6 6 H 1.48498 * 109.47289 * 299.99688 * 3 2 1 7 7 C 1.40041 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00848 * 25.77115 * 7 2 1 9 9 C 1.46381 * 119.99719 * 205.77788 * 7 2 1 10 10 O 1.21694 * 119.99900 * 11.99999 * 9 7 2 11 11 N 1.34770 * 120.00226 * 191.99643 * 9 7 2 12 12 C 1.46496 * 120.00101 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.90715 * 13.90228 * 12 11 9 14 14 C 1.53995 * 109.91520 * 135.00651 * 12 11 9 15 15 C 1.54595 * 105.14196 * 120.58179 * 14 12 11 16 16 C 1.54933 * 102.92231 * 21.95467 * 15 14 12 17 17 N 1.47907 * 109.92120 * 252.59394 * 12 11 9 18 18 H 0.96998 * 119.99976 * 185.08806 * 1 2 3 19 19 H 0.97007 * 120.00336 * 0.02562 * 11 9 7 20 20 H 1.09006 * 110.30420 * 239.49073 * 14 12 11 21 21 H 1.08995 * 110.31081 * 1.66257 * 14 12 11 22 22 H 1.08998 * 110.72804 * 140.31369 * 15 14 12 23 23 H 1.09000 * 110.71999 * 263.41619 * 15 14 12 24 24 H 1.09000 * 110.67250 * 81.02520 * 16 15 14 25 25 H 1.09001 * 110.66730 * 204.15774 * 16 15 14 26 26 H 1.00906 * 110.99369 * 335.83222 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8820 2.3964 1.2125 6 1 1.8820 2.3964 -1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 1.5477 -2.1015 -0.4075 9 6 3.3616 -1.2761 0.5507 10 8 3.7976 -0.3450 1.2018 11 7 4.1257 -2.3655 0.3374 12 6 5.4815 -2.4286 0.8887 13 1 5.6168 -1.6430 1.6321 14 6 5.7227 -3.8068 1.5319 15 6 6.9258 -4.4045 0.7669 16 6 7.6167 -3.1510 0.1739 17 7 6.4745 -2.2768 -0.1970 18 1 -0.4850 -0.8367 0.0745 19 1 3.7783 -3.1076 -0.1818 20 1 5.9647 -3.6939 2.5887 21 1 4.8442 -4.4403 1.4097 22 1 7.5957 -4.9275 1.4495 23 1 6.5862 -5.0721 -0.0249 24 1 8.2443 -2.6672 0.9223 25 1 8.2012 -3.4147 -0.7076 26 1 6.0831 -2.5507 -1.0858 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257942420.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = -48.486307 kcal Electronic energy + Delta-G solvation = -11221.167040 eV Core-core repulsion = 9105.993734 eV Total energy + Delta-G solvation = -2115.173306 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.82557 -36.84151 -32.93132 -32.36460 -29.71586 -27.74757 -25.54196 -21.50445 -20.57570 -19.75665 -17.95634 -16.38841 -15.52551 -14.78311 -14.01057 -13.75543 -13.55028 -13.27049 -12.79905 -12.08089 -12.00869 -11.53226 -11.28881 -10.93966 -10.67329 -10.51973 -10.03036 -9.37201 -8.80216 -8.49381 -7.97315 -7.69184 -6.99463 -4.84062 3.54540 3.61245 4.09139 4.18905 4.45502 4.62687 4.64152 4.90356 5.04351 5.22382 5.50750 5.60117 5.65063 5.85978 5.94341 6.10203 6.16356 6.44912 7.08778 7.44049 7.60881 7.79143 7.96541 8.17920 8.86291 9.15221 10.21645 10.30113 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.075895 B = 0.011110 C = 0.010306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.842943 B = 2519.665370 C = 2716.207306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.076 3.924 3 Si 1.081 2.919 4 H -0.248 1.248 5 H -0.287 1.287 6 H -0.307 1.307 7 C -0.615 4.615 8 H 0.069 0.931 9 C 0.554 3.446 10 O -0.614 6.614 11 N -0.755 5.755 12 C 0.299 3.701 13 H 0.109 0.891 14 C -0.160 4.160 15 C -0.158 4.158 16 C 0.043 3.957 17 N -0.680 5.680 18 H 0.280 0.720 19 H 0.383 0.617 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.320 -7.756 -0.389 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.144 4.144 3 Si 0.907 3.093 4 H -0.172 1.172 5 H -0.213 1.213 6 H -0.237 1.237 7 C -0.651 4.651 8 H 0.087 0.913 9 C 0.361 3.639 10 O -0.504 6.504 11 N -0.408 5.408 12 C 0.103 3.897 13 H 0.127 0.873 14 C -0.201 4.201 15 C -0.197 4.197 16 C -0.088 4.088 17 N -0.311 5.311 18 H 0.091 0.909 19 H 0.215 0.785 20 H 0.089 0.911 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.644 -4.873 0.219 11.708 hybrid contribution -0.562 -3.339 -0.354 3.405 sum 10.082 -8.212 -0.135 13.004 Atomic orbital electron populations 1.70608 1.08264 1.32023 1.34185 1.26913 0.94906 1.04575 0.87973 0.83373 0.78372 0.71981 0.75533 1.17242 1.21292 1.23678 1.21886 0.98547 0.99031 1.45644 0.91274 1.18312 0.85389 0.79931 0.80221 1.90446 1.76157 1.37516 1.46308 1.46147 1.13665 1.21945 1.59031 1.22041 0.80255 0.95560 0.91811 0.87305 1.23194 0.98293 0.98152 1.00472 1.23091 0.97806 0.98723 1.00088 1.23073 0.94600 0.91011 1.00103 1.63259 1.08789 1.53516 1.05561 0.90908 0.78500 0.91064 0.91097 0.91283 0.91812 0.90370 0.91147 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.99 13.65 55.55 0.76 -23.24 15 2 C 0.08 2.22 5.48 -17.37 -0.10 2.12 15 3 Si 1.08 28.30 27.33 -169.99 -4.65 23.65 15 4 H -0.25 -6.82 5.81 56.52 0.33 -6.50 15 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 15 6 H -0.31 -7.60 7.11 56.52 0.40 -7.19 15 7 C -0.62 -17.60 9.81 -35.63 -0.35 -17.95 15 8 H 0.07 1.95 8.06 -52.49 -0.42 1.53 15 9 C 0.55 15.07 7.32 -12.99 -0.10 14.97 15 10 O -0.61 -18.27 12.17 5.19 0.06 -18.20 15 11 N -0.75 -16.34 4.87 -57.13 -0.28 -16.61 15 12 C 0.30 5.65 4.10 -125.58 -0.51 5.14 15 13 H 0.11 2.41 7.05 -51.93 -0.37 2.05 15 14 C -0.16 -2.36 6.70 -25.37 -0.17 -2.53 15 15 C -0.16 -1.87 7.06 -24.87 -0.18 -2.04 15 16 C 0.04 0.55 7.55 -1.90 -0.01 0.53 15 17 N -0.68 -11.53 7.47 -106.40 -0.79 -12.32 15 18 H 0.28 7.85 8.72 -40.82 -0.36 7.50 15 19 H 0.38 7.38 8.74 -40.82 -0.36 7.02 15 20 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.07 1.04 7.89 -51.93 -0.41 0.63 15 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.34 5.45 8.66 -39.29 -0.34 5.11 15 LS Contribution 223.36 15.07 3.37 3.37 Total: -1.00 -31.76 223.36 -6.18 -37.94 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.23 Total: 5.17 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.41 Total: 0.25 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.32 Total: -52.17 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.06 Total: -18.20 kcal Atomic # 14 Polarization: 28.30 SS G_CDS: -4.65 Total: 23.65 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -31.76 -6.18 -37.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257942420.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.543 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds