Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48504 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47037 * 60.00334 * 3 2 1 6 6 H 1.48498 * 109.47289 * 299.99688 * 3 2 1 7 7 C 1.40041 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00848 * 25.77115 * 7 2 1 9 9 C 1.46381 * 119.99719 * 205.77788 * 7 2 1 10 10 O 1.21694 * 119.99900 * 11.99999 * 9 7 2 11 11 N 1.34770 * 120.00226 * 191.99643 * 9 7 2 12 12 C 1.46496 * 120.00101 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.90715 * 13.90228 * 12 11 9 14 14 C 1.53995 * 109.91520 * 135.00651 * 12 11 9 15 15 C 1.54595 * 105.14196 * 120.58179 * 14 12 11 16 16 C 1.54933 * 102.92231 * 21.95467 * 15 14 12 17 17 N 1.47907 * 109.92120 * 252.59394 * 12 11 9 18 18 H 0.96998 * 119.99976 * 185.08806 * 1 2 3 19 19 H 0.97007 * 120.00336 * 0.02562 * 11 9 7 20 20 H 1.09006 * 110.30420 * 239.49073 * 14 12 11 21 21 H 1.08995 * 110.31081 * 1.66257 * 14 12 11 22 22 H 1.08998 * 110.72804 * 140.31369 * 15 14 12 23 23 H 1.09000 * 110.71999 * 263.41619 * 15 14 12 24 24 H 1.09000 * 110.67250 * 81.02520 * 16 15 14 25 25 H 1.09001 * 110.66730 * 204.15774 * 16 15 14 26 26 H 1.00906 * 110.99369 * 335.83222 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8820 2.3964 1.2125 6 1 1.8820 2.3964 -1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 1.5477 -2.1015 -0.4075 9 6 3.3616 -1.2761 0.5507 10 8 3.7976 -0.3450 1.2018 11 7 4.1257 -2.3655 0.3374 12 6 5.4815 -2.4286 0.8887 13 1 5.6168 -1.6430 1.6321 14 6 5.7227 -3.8068 1.5319 15 6 6.9258 -4.4045 0.7669 16 6 7.6167 -3.1510 0.1739 17 7 6.4745 -2.2768 -0.1970 18 1 -0.4850 -0.8367 0.0745 19 1 3.7783 -3.1076 -0.1818 20 1 5.9647 -3.6939 2.5887 21 1 4.8442 -4.4403 1.4097 22 1 7.5957 -4.9275 1.4495 23 1 6.5862 -5.0721 -0.0249 24 1 8.2443 -2.6672 0.9223 25 1 8.2012 -3.4147 -0.7076 26 1 6.0831 -2.5507 -1.0858 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257942420.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = -74.271820 kcal Electronic energy + Delta-G solvation = -11222.285184 eV Core-core repulsion = 9105.993734 eV Total energy + Delta-G solvation = -2116.291450 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.41623 -38.63510 -35.11074 -34.19748 -30.90598 -29.39510 -27.40836 -22.79518 -22.15403 -21.41350 -20.07417 -17.87689 -17.42980 -16.18926 -15.79769 -15.67107 -15.00385 -14.68113 -14.63400 -14.07117 -13.82412 -12.92831 -12.72628 -12.42659 -12.16577 -12.02236 -11.64267 -11.45209 -11.01581 -10.09229 -10.05732 -9.40227 -9.20917 -7.08146 1.43925 1.50260 1.98675 2.11233 2.44762 2.85206 3.16902 3.52370 3.78106 3.90235 4.11847 4.47039 4.55370 4.79212 4.91836 4.96070 5.04858 5.22343 5.51146 5.58419 5.76448 5.92928 5.96535 6.52678 6.64339 7.19919 8.06093 8.11208 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.075895 B = 0.011110 C = 0.010306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.842943 B = 2519.665370 C = 2716.207306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.043 3.957 3 Si 1.116 2.884 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.634 4.634 8 H 0.065 0.935 9 C 0.552 3.448 10 O -0.643 6.643 11 N -0.743 5.743 12 C 0.296 3.704 13 H 0.070 0.930 14 C -0.154 4.154 15 C -0.143 4.143 16 C 0.042 3.958 17 N -0.699 5.699 18 H 0.280 0.720 19 H 0.396 0.604 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 -8.858 -0.727 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.174 4.174 3 Si 0.940 3.060 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.670 4.670 8 H 0.083 0.917 9 C 0.357 3.643 10 O -0.536 6.536 11 N -0.395 5.395 12 C 0.101 3.899 13 H 0.088 0.912 14 C -0.195 4.195 15 C -0.183 4.183 16 C -0.087 4.087 17 N -0.331 5.331 18 H 0.090 0.910 19 H 0.230 0.770 20 H 0.095 0.905 21 H 0.091 0.909 22 H 0.113 0.887 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.005 -6.021 -0.142 13.431 hybrid contribution -0.916 -3.064 -0.242 3.207 sum 11.089 -9.086 -0.384 14.341 Atomic orbital electron populations 1.70625 1.08453 1.32103 1.35245 1.27711 0.95286 1.06658 0.87762 0.82879 0.76081 0.70450 0.76577 1.19705 1.21026 1.21019 1.22061 0.99694 0.99024 1.46224 0.91656 1.18226 0.85532 0.80822 0.79694 1.90427 1.76715 1.38990 1.47433 1.45843 1.14517 1.20702 1.58470 1.22076 0.79003 0.96967 0.91875 0.91205 1.23106 0.99941 0.95560 1.00882 1.23035 0.96495 0.98278 1.00442 1.23207 0.93345 0.90734 1.01417 1.63116 1.09233 1.55649 1.05119 0.90985 0.76989 0.90501 0.90880 0.88740 0.90503 0.90260 0.88549 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.61 13.65 21.83 0.30 -48.32 15 2 C 0.04 2.48 5.48 85.30 0.47 2.95 15 3 Si 1.12 57.48 27.33 68.60 1.88 59.35 15 4 H -0.27 -14.96 5.81 99.48 0.58 -14.39 15 5 H -0.28 -14.39 7.11 99.48 0.71 -13.68 15 6 H -0.28 -13.26 7.11 99.48 0.71 -12.55 15 7 C -0.63 -36.42 9.81 24.83 0.24 -36.18 15 8 H 0.07 3.70 8.06 -2.91 -0.02 3.68 15 9 C 0.55 30.14 7.32 86.36 0.63 30.77 15 10 O -0.64 -38.71 12.17 -4.33 -0.05 -38.77 15 11 N -0.74 -31.76 4.87 -452.89 -2.21 -33.97 15 12 C 0.30 10.94 4.10 129.37 0.53 11.47 15 13 H 0.07 3.14 7.05 -2.39 -0.02 3.12 15 14 C -0.15 -4.18 6.70 31.47 0.21 -3.97 15 15 C -0.14 -2.84 7.06 31.80 0.22 -2.61 15 16 C 0.04 0.95 7.55 86.65 0.65 1.61 15 17 N -0.70 -22.57 7.47 -490.55 -3.66 -26.24 15 18 H 0.28 15.73 8.72 -92.71 -0.81 14.93 15 19 H 0.40 14.83 8.74 -92.70 -0.81 14.02 15 20 H 0.08 2.00 8.14 -2.38 -0.02 1.98 15 21 H 0.07 1.96 7.89 -2.39 -0.02 1.94 15 22 H 0.09 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.08 1.77 8.14 -2.39 -0.02 1.76 15 25 H 0.10 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.34 10.42 8.66 -89.69 -0.78 9.64 15 Total: -1.00 -67.61 223.36 -1.35 -68.96 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.56 Total: 14.94 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 2.96 Total: 4.04 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -5.57 Total: -108.52 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.05 Total: -38.77 kcal Atomic # 14 Polarization: 57.48 SS G_CDS: 1.88 Total: 59.35 kcal Total: -67.61 -1.35 -68.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257942420.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.309 kcal (2) G-P(sol) polarization free energy of solvation -67.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds