Wall clock time and date at job start Mon Mar 30 2020 02:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86802 * 119.99625 * 2 1 4 4 H 1.48498 * 109.47227 * 239.72662 * 3 2 1 5 5 H 1.48500 * 109.47284 * 359.72884 * 3 2 1 6 6 H 1.48504 * 109.46791 * 119.72771 * 3 2 1 7 7 C 1.40041 * 120.00078 * 179.73061 * 2 1 3 8 8 H 1.08001 * 120.00399 * 355.31016 * 7 2 1 9 9 C 1.46380 * 119.99989 * 175.31365 * 7 2 1 10 10 O 1.21685 * 120.00137 * 6.32111 * 9 7 2 11 11 N 1.34775 * 120.00010 * 186.31693 * 9 7 2 12 12 C 1.46500 * 120.00073 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.27356 * 35.63937 * 12 11 9 14 14 C 1.54592 * 110.31191 * 157.83021 * 12 11 9 15 15 C 1.54938 * 102.91944 * 96.96089 * 14 12 11 16 16 N 1.48533 * 103.22820 * 37.41605 * 15 14 12 17 17 C 1.47902 * 105.82030 * 320.79210 * 16 15 14 18 18 H 0.96998 * 119.99746 * 185.08721 * 1 2 3 19 19 H 0.96998 * 120.00250 * 0.02562 * 11 9 7 20 20 H 1.08994 * 110.73021 * 215.31835 * 14 12 11 21 21 H 1.09006 * 110.72113 * 338.60599 * 14 12 11 22 22 H 1.09004 * 110.66802 * 278.98238 * 15 14 12 23 23 H 1.09003 * 110.66820 * 155.85293 * 15 14 12 24 24 H 1.00893 * 110.99855 * 81.30631 * 16 15 14 25 25 H 1.09004 * 109.91904 * 265.97907 * 17 16 15 26 26 H 1.08995 * 109.91922 * 144.68196 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0994 1.6937 -1.2091 5 1 1.2756 2.7465 -0.0066 6 1 3.0894 1.6993 1.2159 7 6 2.0070 -1.2128 0.0057 8 1 1.4698 -2.1462 0.0866 9 6 3.4671 -1.2154 -0.0979 10 8 4.0807 -0.1648 -0.0730 11 7 4.1319 -2.3813 -0.2207 12 6 5.5932 -2.3838 -0.3249 13 1 6.0174 -1.5936 0.2946 14 6 6.1587 -3.7599 0.0954 15 6 6.3534 -4.4833 -1.2608 16 7 6.8148 -3.3968 -2.1624 17 6 6.0248 -2.2026 -1.7920 18 1 -0.4850 -0.8367 0.0745 19 1 3.6428 -3.2187 -0.2408 20 1 7.1120 -3.6440 0.6110 21 1 5.4440 -4.2963 0.7196 22 1 5.4101 -4.9008 -1.6130 23 1 7.1120 -5.2614 -1.1764 24 1 7.8027 -3.2267 -2.0476 25 1 5.1450 -2.1264 -2.4311 26 1 6.6375 -1.3067 -1.8908 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258027886.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:43 Heat of formation + Delta-G solvation = -83.102284 kcal Electronic energy + Delta-G solvation = -11276.673563 eV Core-core repulsion = 9159.999195 eV Total energy + Delta-G solvation = -2116.674368 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.55131 -38.74539 -35.14616 -34.46754 -30.41596 -29.58780 -27.62509 -22.89802 -22.39979 -21.23507 -20.14516 -17.87093 -17.16116 -16.94827 -15.80721 -15.74504 -15.10546 -14.80439 -14.63083 -14.18453 -13.54056 -12.88420 -12.68911 -12.44009 -12.37950 -12.06831 -11.94113 -11.41588 -11.17633 -10.13835 -10.04876 -9.45773 -9.22761 -7.17058 1.42875 1.53181 1.96111 2.18903 2.38001 2.84720 3.22417 3.32556 3.70990 3.99030 4.11567 4.33658 4.44494 4.66685 4.87162 4.91537 5.10261 5.11736 5.43721 5.49627 5.62188 5.86733 6.04898 6.47061 6.61419 7.12445 7.96770 8.09054 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.073281 B = 0.011445 C = 0.010661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.000195 B = 2445.953186 C = 2625.649961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.028 3.972 3 Si 1.168 2.832 4 H -0.299 1.299 5 H -0.308 1.308 6 H -0.297 1.297 7 C -0.618 4.618 8 H 0.066 0.934 9 C 0.550 3.450 10 O -0.641 6.641 11 N -0.733 5.733 12 C 0.114 3.886 13 H 0.063 0.937 14 C -0.152 4.152 15 C 0.046 3.954 16 N -0.676 5.676 17 C 0.038 3.962 18 H 0.278 0.722 19 H 0.398 0.602 20 H 0.096 0.904 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.106 0.894 24 H 0.348 0.652 25 H 0.052 0.948 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.702 -8.503 -0.715 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.187 4.187 3 Si 1.000 3.000 4 H -0.227 1.227 5 H -0.239 1.239 6 H -0.225 1.225 7 C -0.655 4.655 8 H 0.084 0.916 9 C 0.356 3.644 10 O -0.536 6.536 11 N -0.383 5.383 12 C 0.007 3.993 13 H 0.082 0.918 14 C -0.192 4.192 15 C -0.083 4.083 16 N -0.304 5.304 17 C -0.094 4.094 18 H 0.088 0.912 19 H 0.232 0.768 20 H 0.114 0.886 21 H 0.102 0.898 22 H 0.090 0.910 23 H 0.125 0.875 24 H 0.165 0.835 25 H 0.070 0.930 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.504 -6.496 -1.382 13.284 hybrid contribution -0.152 -1.857 0.967 2.099 sum 11.352 -8.353 -0.415 14.101 Atomic orbital electron populations 1.70669 1.07789 1.32126 1.37024 1.27830 0.95726 1.06827 0.88275 0.81826 0.70423 0.69746 0.77987 1.22692 1.23901 1.22539 1.22254 0.91433 0.96159 1.55651 0.91601 1.18309 0.88452 0.82627 0.74993 1.90056 1.69859 1.32040 1.61664 1.45555 1.06062 1.08246 1.78392 1.22122 0.81486 0.98973 0.96746 0.91844 1.23337 1.02426 0.93701 0.99706 1.23186 1.02066 0.94398 0.88664 1.62674 1.08976 1.05103 1.53618 1.23060 0.98099 0.93661 0.94543 0.91177 0.76802 0.88562 0.89760 0.91003 0.87542 0.83509 0.92976 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.54 13.65 21.83 0.30 -49.24 15 2 C 0.03 1.62 5.52 85.30 0.47 2.09 15 3 Si 1.17 62.02 25.82 68.60 1.77 63.79 15 4 H -0.30 -16.29 6.98 99.48 0.69 -15.60 15 5 H -0.31 -15.35 7.11 99.48 0.71 -14.64 15 6 H -0.30 -16.02 7.10 99.48 0.71 -15.32 15 7 C -0.62 -35.44 9.96 24.83 0.25 -35.19 15 8 H 0.07 3.72 8.05 -2.91 -0.02 3.70 15 9 C 0.55 29.35 7.60 86.36 0.66 30.00 15 10 O -0.64 -36.98 11.80 -4.30 -0.05 -37.03 15 11 N -0.73 -30.48 4.98 -442.64 -2.20 -32.69 15 12 C 0.11 3.90 3.30 45.87 0.15 4.05 15 13 H 0.06 2.44 7.64 -2.38 -0.02 2.42 15 14 C -0.15 -3.54 6.68 31.80 0.21 -3.33 15 15 C 0.05 0.96 7.55 86.65 0.65 1.62 15 16 N -0.68 -16.82 7.51 -502.18 -3.77 -20.59 15 17 C 0.04 1.24 7.31 86.45 0.63 1.87 15 18 H 0.28 15.64 8.72 -92.71 -0.81 14.83 15 19 H 0.40 14.80 8.52 -92.71 -0.79 14.01 15 20 H 0.10 1.84 8.14 -2.39 -0.02 1.82 15 21 H 0.08 1.91 7.96 -2.38 -0.02 1.89 15 22 H 0.07 1.64 8.14 -2.38 -0.02 1.62 15 23 H 0.11 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.35 6.90 8.92 -89.70 -0.80 6.10 15 25 H 0.05 2.03 7.92 -2.39 -0.02 2.01 15 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 15 Total: -1.00 -66.73 223.17 -1.38 -68.11 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -0.45 Total: 6.53 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 3.02 Total: 1.11 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -5.68 Total: -102.51 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.05 Total: -37.03 kcal Atomic # 14 Polarization: 62.02 SS G_CDS: 1.77 Total: 63.79 kcal Total: -66.73 -1.38 -68.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258027886.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.995 kcal (2) G-P(sol) polarization free energy of solvation -66.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds