Wall clock time and date at job start Mon Mar 30 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48494 * 109.47365 * 240.00408 * 3 2 1 5 5 H 1.48499 * 109.46739 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47172 * 120.00112 * 3 2 1 7 7 C 1.40054 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00156 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99855 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99978 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99772 * 179.97438 * 9 7 2 12 12 C 1.47425 * 125.65138 * 0.02854 * 11 9 7 13 13 C 1.54908 * 104.92961 * 204.15299 * 12 11 9 14 14 C 1.55154 * 101.58289 * 322.93718 * 13 12 11 15 15 H 1.08994 * 110.71922 * 276.96131 * 14 13 12 16 16 N 1.46901 * 110.72208 * 153.86260 * 14 13 12 17 17 C 1.47290 * 125.79121 * 180.02562 * 11 9 7 18 18 H 0.97001 * 120.00142 * 359.97438 * 1 2 3 19 19 H 1.09002 * 110.36696 * 85.25946 * 12 11 9 20 20 H 1.08995 * 110.36608 * 323.04783 * 12 11 9 21 21 H 1.09008 * 111.00494 * 81.01141 * 13 12 11 22 22 H 1.08999 * 111.00647 * 204.85975 * 13 12 11 23 23 H 1.00899 * 111.00223 * 179.97438 * 16 14 13 24 24 H 1.00898 * 110.99975 * 303.95881 * 16 14 13 25 25 H 1.09004 * 109.85762 * 59.50172 * 17 11 9 26 26 H 1.08999 * 109.87327 * 298.36024 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 3.4161 -3.7928 -0.0022 13 6 3.6786 -5.1908 -0.6157 14 6 2.5004 -6.0138 -0.0310 15 1 2.7353 -6.3627 0.9745 16 7 2.1711 -7.1454 -0.9080 17 6 1.3451 -4.9911 -0.0023 18 1 -0.4850 0.8400 0.0004 19 1 3.8023 -3.7468 1.0161 20 1 3.8737 -3.0171 -0.6161 21 1 3.6284 -5.1556 -1.7041 22 1 4.6369 -5.5898 -0.2831 23 1 1.4055 -7.6839 -0.5315 24 1 1.9656 -6.8295 -1.8440 25 1 0.7183 -5.1149 -0.8855 26 1 0.7494 -5.1300 0.8999 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258082707.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:47 Heat of formation + Delta-G solvation = -67.275644 kcal Electronic energy + Delta-G solvation = -11263.449568 eV Core-core repulsion = 9147.461495 eV Total energy + Delta-G solvation = -2115.988073 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.27074 -37.95745 -34.72963 -34.28530 -30.71223 -29.42457 -27.41987 -24.04736 -21.81818 -21.00383 -18.69196 -17.69794 -17.31096 -16.31577 -16.03738 -15.54890 -14.90530 -14.56119 -14.01547 -13.73740 -13.14298 -13.07127 -12.68754 -12.65195 -12.54187 -12.20696 -12.06400 -11.61592 -10.95750 -10.05076 -9.72111 -9.16695 -8.34013 -6.90746 1.38035 1.41929 1.54190 2.21301 2.39902 2.80037 3.49123 3.59861 3.74078 3.85752 4.19357 4.36611 4.49239 4.72957 4.93775 5.00430 5.04129 5.27389 5.30709 5.59385 5.97799 6.09993 6.36570 6.51353 6.81420 7.41482 8.39165 8.61859 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.075407 B = 0.011068 C = 0.009885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.227329 B = 2529.223474 C = 2831.881414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.252 1.252 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.566 4.566 8 H 0.090 0.910 9 C 0.547 3.453 10 O -0.637 6.637 11 N -0.654 5.654 12 C 0.108 3.892 13 C -0.110 4.110 14 C 0.095 3.905 15 H 0.107 0.893 16 N -0.827 5.827 17 C 0.080 3.920 18 H 0.276 0.724 19 H 0.061 0.939 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.112 0.888 23 H 0.350 0.650 24 H 0.344 0.656 25 H 0.031 0.969 26 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -7.124 -0.778 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.602 4.602 8 H 0.108 0.892 9 C 0.354 3.646 10 O -0.525 6.525 11 N -0.392 5.392 12 C -0.015 4.015 13 C -0.148 4.148 14 C -0.018 4.018 15 H 0.125 0.875 16 N -0.356 5.356 17 C -0.046 4.046 18 H 0.086 0.914 19 H 0.079 0.921 20 H 0.084 0.916 21 H 0.091 0.909 22 H 0.130 0.870 23 H 0.163 0.837 24 H 0.157 0.843 25 H 0.049 0.951 26 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 9.031 -7.261 -0.629 11.605 hybrid contribution -1.290 1.201 -0.034 1.763 sum 7.741 -6.060 -0.663 9.854 Atomic orbital electron populations 1.70194 1.09724 1.29184 1.36254 1.27085 0.95564 1.05173 0.91046 0.85013 0.78181 0.74268 0.80487 1.17565 1.19800 1.17598 1.21397 0.94742 0.89538 1.54551 0.89175 1.18522 0.86367 0.83471 0.76219 1.90542 1.16348 1.87464 1.58156 1.48574 1.07420 1.04368 1.78859 1.22216 0.80790 0.98089 1.00438 1.22786 0.99107 0.92361 1.00592 1.22458 0.92514 0.88409 0.98442 0.87534 1.59015 1.47967 1.22782 1.05848 1.22765 0.97753 0.85391 0.98726 0.91443 0.92085 0.91559 0.90925 0.86967 0.83655 0.84260 0.95096 0.95182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.68 11.83 21.84 0.26 -51.42 15 2 C 0.03 1.49 5.50 85.31 0.47 1.96 15 3 Si 1.00 41.25 29.56 68.60 2.03 43.27 15 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 15 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 6 H -0.25 -9.70 7.11 99.48 0.71 -8.99 15 7 C -0.57 -33.01 8.98 24.83 0.22 -32.79 15 8 H 0.09 4.69 6.64 -2.91 -0.02 4.67 15 9 C 0.55 33.54 7.78 86.36 0.67 34.21 15 10 O -0.64 -45.09 15.36 -4.31 -0.07 -45.15 15 11 N -0.65 -31.41 3.34 -816.18 -2.72 -34.14 15 12 C 0.11 3.88 6.51 86.85 0.57 4.44 15 13 C -0.11 -2.93 6.74 31.98 0.22 -2.71 15 14 C 0.09 2.61 4.10 46.10 0.19 2.80 15 15 H 0.11 2.66 8.14 -2.39 -0.02 2.64 15 16 N -0.83 -18.81 9.33 -163.77 -1.53 -20.34 15 17 C 0.08 3.19 6.63 86.68 0.57 3.77 15 18 H 0.28 15.60 8.29 -92.71 -0.77 14.83 15 19 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.07 2.43 7.14 -2.39 -0.02 2.41 15 21 H 0.07 1.94 8.09 -2.38 -0.02 1.92 15 22 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.35 6.95 9.08 -89.69 -0.81 6.14 15 24 H 0.34 7.77 8.85 -89.70 -0.79 6.98 15 25 H 0.03 1.30 7.94 -2.38 -0.02 1.28 15 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 Total: -1.00 -78.25 225.58 0.47 -77.77 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.41 Total: 18.32 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 2.91 Total: 11.68 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.99 Total: -105.90 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.07 Total: -45.15 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -78.25 0.47 -77.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258082707.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.499 kcal (2) G-P(sol) polarization free energy of solvation -78.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds