Wall clock time and date at job start Mon Mar 30 2020 02:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86799 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47054 * 274.98284 * 3 2 1 5 5 H 1.48507 * 109.47111 * 34.97803 * 3 2 1 6 6 H 1.48499 * 109.47192 * 154.97869 * 3 2 1 7 7 C 1.40044 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00298 * 186.12686 * 7 2 1 9 9 C 1.46378 * 119.99972 * 6.13085 * 7 2 1 10 10 O 1.21687 * 120.00048 * 353.81714 * 9 7 2 11 11 N 1.34784 * 119.99661 * 173.82034 * 9 7 2 12 12 C 1.47021 * 125.64943 * 0.02562 * 11 9 7 13 13 C 1.54324 * 107.27049 * 180.79293 * 12 11 9 14 14 C 1.55156 * 102.94020 * 22.19375 * 13 12 11 15 15 H 1.09003 * 111.00891 * 82.57264 * 14 13 12 16 16 N 1.46906 * 111.00480 * 206.42231 * 14 13 12 17 17 C 1.47429 * 125.64287 * 179.71516 * 11 9 7 18 18 H 0.97001 * 120.00246 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.88178 * 300.21097 * 12 11 9 20 20 H 1.08998 * 109.87911 * 61.22443 * 12 11 9 21 21 H 1.08996 * 110.72257 * 140.55417 * 13 12 11 22 22 H 1.09000 * 110.72072 * 263.83661 * 13 12 11 23 23 H 1.00893 * 111.00323 * 179.97438 * 16 14 13 24 24 H 1.00899 * 111.00002 * 303.95991 * 16 14 13 25 25 H 1.09003 * 110.36574 * 274.97381 * 17 11 9 26 26 H 1.08997 * 110.36763 * 37.29669 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4947 2.6200 0.8026 6 1 3.5869 1.4121 0.5922 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2155 0.1004 9 6 1.2814 -2.4769 -0.1343 10 8 0.0645 -2.4831 -0.1336 11 7 1.9612 -3.6341 -0.2591 12 6 3.4249 -3.7706 -0.2746 13 6 3.7434 -5.2696 -0.4564 14 6 2.4455 -5.8250 -1.1001 15 1 2.4390 -5.6539 -2.1766 16 7 2.2751 -7.2519 -0.7949 17 6 1.3599 -4.9732 -0.3961 18 1 -0.4850 0.8400 -0.0004 19 1 3.8416 -3.1998 -1.1044 20 1 3.8406 -3.4125 0.6672 21 1 4.5937 -5.4050 -1.1248 22 1 3.9294 -5.7440 0.5071 23 1 1.4309 -7.6128 -1.2132 24 1 3.0807 -7.7833 -1.0892 25 1 1.1297 -5.3879 0.5854 26 1 0.4597 -4.9240 -1.0087 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258082708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:50 Heat of formation + Delta-G solvation = -37.951883 kcal Electronic energy + Delta-G solvation = -11238.675786 eV Core-core repulsion = 9123.959287 eV Total energy + Delta-G solvation = -2114.716499 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.47748 -35.92512 -32.92399 -32.43011 -29.14366 -27.72748 -25.58735 -22.28697 -20.20007 -19.10415 -16.70011 -15.89115 -15.49477 -15.15160 -14.27829 -13.60901 -13.31700 -12.88431 -12.74197 -11.90924 -11.38361 -11.11171 -11.02165 -10.89798 -10.57815 -10.46882 -10.34233 -10.12470 -8.84377 -8.63964 -7.62836 -7.15249 -6.19857 -4.63057 3.14369 3.21265 3.25246 4.08140 4.42435 4.55602 4.87704 4.99350 5.25004 5.44849 5.74882 5.83474 6.02093 6.12101 6.40142 6.50615 6.55114 6.70422 7.24758 7.43288 7.45636 7.50144 8.12507 8.43955 9.02772 9.51500 10.58510 10.77396 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.076942 B = 0.010957 C = 0.009762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.825242 B = 2554.850044 C = 2867.623705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.571 3.429 10 O -0.577 6.577 11 N -0.646 5.646 12 C 0.123 3.877 13 C -0.127 4.127 14 C 0.070 3.930 15 H 0.046 0.954 16 N -0.840 5.840 17 C 0.124 3.876 18 H 0.269 0.731 19 H 0.053 0.947 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.341 0.659 24 H 0.339 0.661 25 H 0.054 0.946 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 -7.593 -2.438 10.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.088 0.912 9 C 0.377 3.623 10 O -0.460 6.460 11 N -0.387 5.387 12 C -0.002 4.002 13 C -0.165 4.165 14 C -0.042 4.042 15 H 0.064 0.936 16 N -0.370 5.370 17 C -0.001 4.001 18 H 0.079 0.921 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.096 0.904 23 H 0.153 0.847 24 H 0.151 0.849 25 H 0.072 0.928 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.606 -7.151 -1.659 9.876 hybrid contribution 0.627 0.603 -1.082 1.388 sum 7.233 -6.548 -2.741 10.134 Atomic orbital electron populations 1.70035 1.07117 1.27326 1.35226 1.25738 0.94615 1.00344 0.92604 0.86338 0.80252 0.81380 0.78682 1.19784 1.20403 1.18819 1.20897 0.94137 0.89169 1.53401 0.91194 1.18056 0.86605 0.81212 0.76382 1.90605 1.13902 1.85577 1.55892 1.48666 1.04751 1.05500 1.79738 1.21548 0.84199 0.93833 1.00669 1.22704 0.96321 0.96248 1.01223 1.22559 0.96880 0.87748 0.97001 0.93570 1.58594 1.07656 1.02875 1.67866 1.21717 0.95069 0.84204 0.99062 0.92069 0.92861 0.92758 0.91441 0.90391 0.84683 0.84917 0.92755 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.48 11.85 55.55 0.66 -22.82 15 2 C 0.09 2.46 5.49 -17.37 -0.10 2.37 15 3 Si 0.91 20.40 29.56 -169.99 -5.03 15.37 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.54 -15.68 9.05 -35.63 -0.32 -16.00 15 8 H 0.07 1.87 7.18 -52.49 -0.38 1.49 15 9 C 0.57 17.09 7.78 -12.98 -0.10 16.99 15 10 O -0.58 -19.53 15.30 5.20 0.08 -19.45 15 11 N -0.65 -15.66 3.33 -172.17 -0.57 -16.24 15 12 C 0.12 2.36 6.06 -3.06 -0.02 2.34 15 13 C -0.13 -1.89 6.61 -24.90 -0.16 -2.06 15 14 C 0.07 1.09 4.19 -65.56 -0.27 0.82 15 15 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 16 N -0.84 -10.54 9.38 -2.85 -0.03 -10.57 15 17 C 0.12 2.58 6.60 -2.53 -0.02 2.56 15 18 H 0.27 7.40 8.29 -40.82 -0.34 7.06 15 19 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 20 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.08 1.14 8.14 -51.93 -0.42 0.71 15 23 H 0.34 3.81 9.08 -39.30 -0.36 3.45 15 24 H 0.34 3.40 9.03 -39.29 -0.35 3.04 15 25 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.06 1.31 8.04 -51.93 -0.42 0.89 15 LS Contribution 227.01 15.07 3.42 3.42 Total: -1.00 -34.91 227.01 -5.64 -40.54 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.18 Total: 2.72 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.99 Total: 7.02 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.06 Total: -49.62 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.08 Total: -19.45 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -34.91 -5.64 -40.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258082708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.590 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds