Wall clock time and date at job start Mon Mar 30 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47211 * 2 1 4 4 C 1.52998 * 109.46896 * 119.99990 * 2 1 3 5 5 C 1.52996 * 109.47286 * 68.07021 * 4 2 1 6 6 C 1.50697 * 113.08239 * 63.41859 * 5 4 2 7 7 H 1.08003 * 119.99934 * 354.78350 * 6 5 4 8 8 C 1.37881 * 120.00074 * 174.79012 * 6 5 4 9 9 N 1.31510 * 119.99940 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99999 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47263 * 59.99349 * 10 8 6 12 12 H 1.48493 * 109.47198 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46616 * 299.99463 * 10 8 6 14 14 C 1.54039 * 113.81637 * 291.50949 * 5 4 2 15 15 O 1.44178 * 85.51865 * 268.35021 * 14 5 4 16 16 C 1.44182 * 93.33985 * 335.80947 * 15 14 5 17 17 H 1.09006 * 109.47266 * 156.29148 * 1 2 3 18 18 H 1.08998 * 109.47468 * 276.29964 * 1 2 3 19 19 H 1.09005 * 109.47120 * 36.29555 * 1 2 3 20 20 H 1.08998 * 109.47314 * 239.99804 * 2 1 3 21 21 H 1.09002 * 109.47152 * 180.02562 * 3 2 1 22 22 H 1.09003 * 109.46989 * 299.99961 * 3 2 1 23 23 H 1.08998 * 109.47142 * 59.99698 * 3 2 1 24 24 H 1.09000 * 109.47346 * 308.06902 * 4 2 1 25 25 H 1.09004 * 109.47323 * 188.06984 * 4 2 1 26 26 H 0.97007 * 120.00015 * 180.02562 * 9 8 6 27 27 H 1.08992 * 113.86300 * 22.50284 * 14 5 4 28 28 H 1.08997 * 113.86082 * 154.20400 * 14 5 4 29 29 H 1.09002 * 113.86232 * 270.04121 * 16 15 14 30 30 H 1.08997 * 113.86297 * 138.33867 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.7020 -2.2103 1.1521 6 6 2.3881 -2.8979 0.0000 7 1 2.9722 -2.3217 -0.7023 8 6 2.2700 -4.2626 -0.1575 9 7 1.5591 -4.9642 0.6979 10 14 3.1211 -5.1150 -1.5853 11 1 4.5860 -4.8897 -1.4943 12 1 2.8404 -6.5722 -1.5302 13 1 2.6136 -4.5608 -2.8662 14 6 0.1949 -2.5137 1.2495 15 8 0.4292 -2.6514 2.6654 16 6 1.8256 -2.9647 2.4894 17 1 -0.3634 -0.9410 -0.4132 18 1 -0.3634 0.1128 1.0214 19 1 -0.3633 0.8283 -0.6084 20 1 1.8933 -0.5138 -0.8899 21 1 3.1300 1.4425 -0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6766 1.9564 0.8899 24 1 1.5636 -0.2975 2.1334 25 1 3.1204 -0.5980 1.3244 26 1 1.4763 -5.9244 0.5873 27 1 -0.4427 -1.6693 0.9880 28 1 -0.1006 -3.4412 0.7592 29 1 2.0278 -4.0299 2.3778 30 1 2.4811 -2.4778 3.2114 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258468180.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:26 Heat of formation + Delta-G solvation = -36.696783 kcal Electronic energy + Delta-G solvation = -12036.268760 eV Core-core repulsion = 10025.147030 eV Total energy + Delta-G solvation = -2011.121731 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.11584 -36.79595 -34.72291 -31.13213 -28.58378 -27.05926 -26.33038 -25.95502 -20.95699 -20.36594 -18.22704 -17.06324 -16.34395 -16.14393 -15.77419 -15.30733 -14.62807 -14.08949 -13.61687 -13.14431 -13.07682 -12.94116 -12.55792 -12.52255 -12.44658 -12.11409 -11.58835 -11.41883 -11.26395 -11.01406 -10.54968 -10.29374 -9.75469 -7.98890 -6.24599 1.44212 1.44963 1.52518 2.42506 3.09679 3.51362 4.08468 4.21326 4.25771 4.60926 4.68878 4.78998 4.86569 4.96402 4.99574 5.01092 5.14233 5.20913 5.30420 5.40250 5.47950 5.58549 5.64156 5.67600 5.79025 5.89019 6.02517 6.40715 6.87335 7.43597 8.90664 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.038545 B = 0.016867 C = 0.013498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.244993 B = 1659.615980 C = 2073.808684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.077 4.077 5 C 0.006 3.994 6 C -0.512 4.512 7 H 0.058 0.942 8 C 0.016 3.984 9 N -0.907 5.907 10 Si 0.956 3.044 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.271 1.271 14 C 0.021 3.979 15 O -0.427 6.427 16 C 0.020 3.980 17 H 0.047 0.953 18 H 0.050 0.950 19 H 0.068 0.932 20 H 0.059 0.941 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.260 0.740 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 7.695 -2.367 8.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.195 4.195 4 C -0.114 4.114 5 C 0.005 3.995 6 C -0.550 4.550 7 H 0.076 0.924 8 C -0.183 4.183 9 N -0.546 5.546 10 Si 0.782 3.218 11 H -0.197 1.197 12 H -0.214 1.214 13 H -0.196 1.196 14 C -0.055 4.055 15 O -0.347 6.347 16 C -0.057 4.057 17 H 0.066 0.934 18 H 0.069 0.931 19 H 0.087 0.913 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.147 7.533 -2.110 7.825 hybrid contribution 0.462 -1.063 -0.569 1.291 sum 0.609 6.470 -2.679 7.029 Atomic orbital electron populations 1.22052 0.95656 1.01170 1.01184 1.20992 0.95862 0.96090 0.97884 1.21822 1.00760 0.94904 1.02005 1.21291 0.99449 0.93549 0.97151 1.21029 0.92425 0.92869 0.93130 1.21357 1.30526 0.92456 1.10637 0.92409 1.25740 0.95756 0.98266 0.98540 1.70028 1.40807 1.07108 1.36680 0.85644 0.79096 0.77087 0.79994 1.19740 1.21411 1.19628 1.24697 1.00563 1.00136 0.80081 1.89260 1.27655 1.91329 1.26454 1.24389 0.81324 1.02849 0.97112 0.93369 0.93087 0.91309 0.92219 0.92920 0.91661 0.92445 0.93542 0.93031 0.93012 0.88675 0.92627 0.88936 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 7.60 71.98 0.55 -4.13 16 2 C -0.09 -3.12 2.83 -10.79 -0.03 -3.15 16 3 C -0.14 -3.71 9.07 71.98 0.65 -3.06 16 4 C -0.08 -3.12 4.19 30.59 0.13 -2.99 16 5 C 0.01 0.29 0.92 -52.23 -0.05 0.24 16 6 C -0.51 -26.78 8.05 25.60 0.21 -26.57 16 7 H 0.06 2.95 7.10 -2.91 -0.02 2.93 16 8 C 0.02 0.83 5.08 84.66 0.43 1.26 16 9 N -0.91 -50.62 8.84 21.45 0.19 -50.43 16 10 Si 0.96 42.18 29.54 68.60 2.03 44.21 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 C 0.02 1.07 7.13 72.28 0.52 1.59 16 15 O -0.43 -22.61 12.37 -148.98 -1.84 -24.45 16 16 C 0.02 1.05 7.94 72.27 0.57 1.62 16 17 H 0.05 1.73 6.28 -2.38 -0.01 1.72 16 18 H 0.05 1.67 7.04 -2.39 -0.02 1.65 16 19 H 0.07 1.82 7.91 -2.38 -0.02 1.80 16 20 H 0.06 2.30 6.83 -2.39 -0.02 2.28 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.05 1.84 7.88 -2.39 -0.02 1.82 16 25 H 0.05 2.05 8.13 -2.38 -0.02 2.03 16 26 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 27 H 0.10 4.18 3.69 -2.39 -0.01 4.17 16 28 H 0.06 3.10 6.41 -2.39 -0.02 3.09 16 29 H 0.09 5.29 5.46 -2.39 -0.01 5.27 16 30 H 0.05 2.40 8.10 -2.39 -0.02 2.38 16 Total: -1.00 -57.63 232.42 4.46 -53.17 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.11 Total: 12.70 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 2.98 Total: -35.19 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.19 Total: -50.43 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -1.84 Total: -24.45 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -57.63 4.46 -53.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258468180.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.471 kcal (2) G-P(sol) polarization free energy of solvation -57.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds