Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 H 1.08997 * 110.60349 * 52.22377 * 3 2 1 5 5 C 1.54108 * 110.54889 * 175.00027 * 3 2 1 6 6 N 1.47046 * 103.85937 * 118.59524 * 5 3 2 7 7 C 1.37200 * 125.40757 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99905 * 174.28212 * 7 6 5 9 9 C 1.38876 * 119.99994 * 354.55002 * 7 6 5 10 10 N 1.31480 * 119.99665 * 6.63237 * 9 7 6 11 11 Si 1.86796 * 120.00235 * 186.63259 * 9 7 6 12 12 H 1.48495 * 109.47098 * 89.99942 * 11 9 7 13 13 H 1.48496 * 109.47350 * 210.00393 * 11 9 7 14 14 H 1.48496 * 109.46923 * 330.00114 * 11 9 7 15 15 C 1.33944 * 109.18610 * 0.26665 * 6 5 3 16 16 O 1.21582 * 123.04943 * 179.74280 * 15 6 5 17 17 N 1.33955 * 113.91269 * 359.52486 * 15 6 5 18 18 H 1.09005 * 109.47566 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47356 * 300.00119 * 1 2 3 20 20 H 1.09004 * 109.47165 * 59.99667 * 1 2 3 21 21 H 1.09000 * 109.47356 * 239.99881 * 2 1 3 22 22 H 1.09003 * 109.47130 * 119.99782 * 2 1 3 23 23 H 1.08998 * 110.54605 * 0.02562 * 5 3 2 24 24 H 1.09001 * 110.66791 * 237.24664 * 5 3 2 25 25 H 0.97003 * 119.99546 * 179.97438 * 10 9 7 26 26 H 0.96997 * 125.41489 * 180.21126 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5786 2.0124 0.8064 5 6 3.5756 1.4732 0.1258 6 7 4.0176 2.1267 -1.1151 7 6 5.3214 2.3799 -1.4594 8 1 5.5541 2.7819 -2.4344 9 6 6.3422 2.1142 -0.5561 10 7 6.0753 1.5005 0.5757 11 14 8.0945 2.6285 -0.9490 12 1 8.3343 4.0011 -0.4357 13 1 9.0435 1.6859 -0.3040 14 1 8.2985 2.6074 -2.4197 15 6 2.9451 2.4403 -1.8537 16 8 3.0222 2.9961 -2.9323 17 7 1.7799 2.0819 -1.2985 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 3.9747 0.4609 0.1877 24 1 3.8788 2.0573 0.9947 25 1 6.7884 1.3145 1.2064 26 1 0.9036 2.2252 -1.6889 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259190819.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = -19.742323 kcal Electronic energy + Delta-G solvation = -11487.671978 eV Core-core repulsion = 9373.745105 eV Total energy + Delta-G solvation = -2113.926874 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.83211 -35.52465 -34.21931 -32.00892 -30.67417 -27.62489 -25.02709 -22.71755 -20.57862 -19.97782 -17.28120 -15.85570 -15.42608 -14.89273 -14.28076 -13.81642 -13.32232 -12.76539 -12.69824 -12.43096 -11.64151 -11.36841 -11.17065 -10.93333 -10.65833 -10.59686 -10.30411 -10.01799 -9.03894 -8.76685 -8.21979 -7.69451 -6.24229 -3.70588 3.24168 3.29994 3.34857 3.99464 4.36479 4.40751 5.14412 5.28039 5.35244 5.37569 5.53800 5.87079 5.93556 6.03854 6.15755 6.40573 6.55070 6.73541 7.07508 7.31318 7.60301 8.11768 8.32454 8.71297 9.31932 9.50311 10.27058 10.86282 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.059643 B = 0.013260 C = 0.011196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.346178 B = 2111.150795 C = 2500.191265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.109 3.891 4 H 0.071 0.929 5 C 0.137 3.863 6 N -0.471 5.471 7 C -0.276 4.276 8 H 0.102 0.898 9 C 0.021 3.979 10 N -0.902 5.902 11 Si 0.933 3.067 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.649 3.351 16 O -0.632 6.632 17 N -0.753 5.753 18 H 0.050 0.950 19 H 0.052 0.948 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.266 0.734 26 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.524 -3.281 3.617 8.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.002 3.998 4 H 0.089 0.911 5 C 0.012 3.988 6 N -0.195 5.195 7 C -0.403 4.403 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.544 5.544 11 Si 0.760 3.240 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.351 3.649 16 O -0.517 6.517 17 N -0.415 5.415 18 H 0.069 0.931 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -6.122 -3.051 3.229 7.564 hybrid contribution 0.434 0.141 -0.037 0.458 sum -5.688 -2.910 3.192 7.142 Atomic orbital electron populations 1.21747 0.96242 1.01165 1.01441 1.21926 0.95503 0.96733 1.02698 1.22170 0.98168 0.92897 0.86572 0.91100 1.22168 0.86795 1.00044 0.89747 1.42763 1.04164 1.54936 1.17682 1.19437 0.79104 1.40464 1.01290 0.88025 1.25173 1.00008 0.97225 0.95501 1.69890 1.33220 1.41534 1.09732 0.85816 0.81394 0.78229 0.78588 1.20515 1.21040 1.19599 1.15907 0.81364 0.82839 0.84827 1.90747 1.86108 1.52166 1.22633 1.45070 1.07475 1.66856 1.22132 0.93054 0.92902 0.93007 0.91514 0.90946 0.90331 0.90210 0.92386 0.75079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.85 37.15 0.37 -1.41 15 2 C -0.13 -1.93 5.45 -26.73 -0.15 -2.07 15 3 C 0.11 1.96 3.71 -67.05 -0.25 1.71 15 4 H 0.07 1.14 8.14 -51.93 -0.42 0.71 15 5 C 0.14 3.12 5.30 -3.17 -0.02 3.11 15 6 N -0.47 -12.78 3.07 -119.61 -0.37 -13.14 15 7 C -0.28 -7.95 9.92 -14.91 -0.15 -8.10 15 8 H 0.10 3.03 7.68 -52.49 -0.40 2.63 15 9 C 0.02 0.57 5.48 -17.47 -0.10 0.48 15 10 N -0.90 -24.21 10.39 55.49 0.58 -23.63 15 11 Si 0.93 21.22 29.56 -169.99 -5.02 16.20 15 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 14 H -0.27 -6.16 7.11 56.52 0.40 -5.75 15 15 C 0.65 17.12 8.55 -88.39 -0.76 16.37 15 16 O -0.63 -18.93 17.53 5.29 0.09 -18.84 15 17 N -0.75 -15.27 5.86 -58.20 -0.34 -15.62 15 18 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.05 0.62 7.60 -51.93 -0.39 0.22 15 21 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.08 1.86 7.21 -51.93 -0.37 1.48 15 24 H 0.08 1.91 7.38 -51.93 -0.38 1.52 15 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 26 H 0.41 7.16 8.52 -40.82 -0.35 6.81 15 LS Contribution 223.41 15.07 3.37 3.37 Total: -1.00 -31.96 223.41 -5.89 -37.85 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.15 Total: 3.74 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -1.05 Total: 10.08 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.13 Total: -52.39 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.09 Total: -18.84 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -31.96 -5.89 -37.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259190819.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.108 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds