Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 C 1.52991 * 109.47050 * 239.99301 * 2 1 3 5 5 C 1.53001 * 109.46784 * 119.99445 * 2 1 3 6 6 C 1.50708 * 112.99604 * 64.69445 * 5 2 1 7 7 H 1.07994 * 120.00358 * 359.97438 * 6 5 2 8 8 C 1.37882 * 119.99373 * 179.97438 * 6 5 2 9 9 N 1.31508 * 120.00213 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99408 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46805 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47289 * 300.00059 * 10 8 6 13 13 H 1.48500 * 109.46930 * 60.00076 * 10 8 6 14 14 C 1.54035 * 113.81585 * 196.51755 * 5 2 1 15 15 O 1.44577 * 85.38119 * 136.86987 * 14 5 2 16 16 C 1.44177 * 93.32431 * 335.80339 * 15 14 5 17 17 H 1.09003 * 109.47376 * 300.00580 * 1 2 3 18 18 H 1.09008 * 109.47093 * 60.00021 * 1 2 3 19 19 H 1.08996 * 109.47662 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47096 * 185.92651 * 3 2 1 21 21 H 1.09003 * 109.46753 * 305.92221 * 3 2 1 22 22 H 1.08994 * 109.47554 * 65.92181 * 3 2 1 23 23 H 1.09005 * 109.47435 * 300.00454 * 4 2 1 24 24 H 1.09008 * 109.47094 * 60.00626 * 4 2 1 25 25 H 1.08995 * 109.47362 * 179.97438 * 4 2 1 26 26 H 0.97008 * 119.99483 * 179.97438 * 9 8 6 27 27 H 1.09005 * 113.86522 * 251.07527 * 14 5 2 28 28 H 1.08994 * 113.86637 * 22.78109 * 14 5 2 29 29 H 1.09005 * 113.86354 * 270.04644 * 16 15 14 30 30 H 1.08994 * 113.97946 * 138.36046 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7211 1.2493 6 6 1.6770 -2.1837 1.2743 7 1 1.1125 -2.6140 0.4604 8 6 2.0659 -2.9723 2.3363 9 7 2.7538 -2.4484 3.3272 10 14 1.6155 -4.7850 2.3676 11 1 2.1475 -5.4058 3.6073 12 1 0.1378 -4.9285 2.3362 13 1 2.2038 -5.4617 1.1839 14 6 3.5210 -0.4422 1.5676 15 8 3.0818 -0.3178 2.9394 16 6 1.7309 0.0189 2.5644 17 1 -0.3634 0.5139 0.8899 18 1 -0.3634 0.5139 -0.8901 19 1 -0.3634 -1.0276 0.0005 20 1 3.1249 1.4443 -0.1061 21 1 1.5927 1.9860 -0.8323 22 1 1.7659 1.9248 0.9382 23 1 1.6766 -1.7491 -1.2490 24 1 1.6767 -0.2075 -2.1392 25 1 3.1299 -0.7210 -1.2494 26 1 3.0270 -3.0033 4.0745 27 1 4.1784 -1.2931 1.3884 28 1 3.8968 0.4867 1.1389 29 1 1.5616 1.0884 2.4393 30 1 0.9682 -0.4653 3.1742 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259354840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = -3.622606 kcal Electronic energy + Delta-G solvation = -12336.537174 eV Core-core repulsion = 10326.849648 eV Total energy + Delta-G solvation = -2009.687527 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.31079 -35.00452 -32.18736 -27.55741 -26.88309 -26.67549 -24.45724 -23.90151 -20.29516 -17.58416 -15.83345 -15.19408 -14.20203 -14.14013 -13.74408 -13.09213 -12.67999 -11.95415 -11.90429 -11.60681 -11.45500 -11.17799 -10.90750 -10.64178 -10.62639 -10.29454 -10.05013 -9.99063 -9.15975 -9.12199 -8.31843 -8.30551 -7.48875 -5.66603 -3.99092 3.34707 3.40652 3.42161 4.47634 5.28821 5.57142 5.73753 5.77586 5.92392 6.25612 6.28755 6.43721 6.47785 6.51033 6.61365 6.67427 6.71133 6.85172 6.87888 7.04620 7.20381 7.22991 7.48086 7.50323 7.91453 7.97305 8.14191 8.50983 9.03306 9.65202 11.14430 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044920 B = 0.018598 C = 0.015439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.176682 B = 1505.161149 C = 1813.102114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.063 4.063 3 C -0.145 4.145 4 C -0.124 4.124 5 C 0.046 3.954 6 C -0.512 4.512 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.826 5.826 10 Si 0.880 3.120 11 H -0.289 1.289 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.025 3.975 15 O -0.319 6.319 16 C 0.027 3.973 17 H 0.044 0.956 18 H 0.032 0.968 19 H 0.059 0.941 20 H 0.051 0.949 21 H 0.038 0.962 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.252 0.748 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 3.963 -5.081 6.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.182 4.182 5 C 0.045 3.955 6 C -0.550 4.550 7 H 0.079 0.921 8 C -0.141 4.141 9 N -0.460 5.460 10 Si 0.708 3.292 11 H -0.215 1.215 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.053 4.053 15 O -0.235 6.235 16 C -0.051 4.051 17 H 0.064 0.936 18 H 0.051 0.949 19 H 0.078 0.922 20 H 0.070 0.930 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.570 3.887 -4.610 6.231 hybrid contribution -0.257 -1.004 0.003 1.037 sum -1.827 2.882 -4.608 5.733 Atomic orbital electron populations 1.21686 0.95701 1.01651 0.99222 1.20542 0.94915 0.93663 0.97244 1.22069 1.00526 0.97113 1.00450 1.21694 1.00226 1.00727 0.95519 1.20953 0.91035 0.95082 0.88413 1.20546 1.36667 0.91765 1.05999 0.92121 1.25211 0.95094 0.97813 0.95978 1.70605 1.34211 1.33314 1.07871 0.86879 0.78735 0.86393 0.77226 1.21481 1.20391 1.20392 1.24065 0.99690 0.96568 0.84999 1.89868 1.22198 1.89256 1.22210 1.23939 0.88096 0.94568 0.98528 0.93648 0.94941 0.92167 0.93015 0.94244 0.92881 0.92014 0.95122 0.93640 0.93708 0.91751 0.94857 0.95145 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.19 37.16 0.30 -2.03 16 2 C -0.06 -1.26 0.48 -154.51 -0.07 -1.33 16 3 C -0.14 -2.55 7.59 37.16 0.28 -2.27 16 4 C -0.12 -2.33 8.14 37.15 0.30 -2.03 16 5 C 0.05 1.09 0.50 -154.58 -0.08 1.02 16 6 C -0.51 -13.52 7.34 -34.43 -0.25 -13.78 16 7 H 0.06 1.58 6.25 -52.49 -0.33 1.25 16 8 C 0.07 1.79 5.20 -17.82 -0.09 1.70 16 9 N -0.83 -23.73 9.23 55.43 0.51 -23.22 16 10 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 14 C 0.02 0.62 7.34 37.64 0.28 0.89 16 15 O -0.32 -8.73 9.42 -35.23 -0.33 -9.06 16 16 C 0.03 0.66 6.92 37.64 0.26 0.93 16 17 H 0.04 0.83 7.69 -51.93 -0.40 0.43 16 18 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 19 H 0.06 1.18 7.23 -51.93 -0.38 0.81 16 20 H 0.05 0.90 6.39 -51.93 -0.33 0.57 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.94 5.95 -51.93 -0.31 0.63 16 23 H 0.06 1.23 6.65 -51.93 -0.35 0.88 16 24 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.06 1.70 8.05 -51.93 -0.42 1.28 16 28 H 0.03 0.74 5.77 -51.93 -0.30 0.44 16 29 H 0.03 0.68 5.97 -51.93 -0.31 0.37 16 30 H 0.06 1.70 8.06 -51.93 -0.42 1.28 16 LS Contribution 229.97 15.07 3.47 3.47 Total: -1.00 -28.39 229.97 -4.80 -33.19 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -4.35 Total: -3.52 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 0.93 Total: -16.91 kcal Atomic # 7 Polarization: -23.73 SS G_CDS: 0.51 Total: -23.22 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.33 Total: -9.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.39 -4.80 -33.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259354840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.570 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds