Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 C 1.52991 * 109.47050 * 239.99301 * 2 1 3 5 5 C 1.53001 * 109.46784 * 119.99445 * 2 1 3 6 6 C 1.50708 * 112.99604 * 64.69445 * 5 2 1 7 7 H 1.07994 * 120.00358 * 359.97438 * 6 5 2 8 8 C 1.37882 * 119.99373 * 179.97438 * 6 5 2 9 9 N 1.31508 * 120.00213 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99408 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46805 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47289 * 300.00059 * 10 8 6 13 13 H 1.48500 * 109.46930 * 60.00076 * 10 8 6 14 14 C 1.54035 * 113.81585 * 196.51755 * 5 2 1 15 15 O 1.44577 * 85.38119 * 136.86987 * 14 5 2 16 16 C 1.44177 * 93.32431 * 335.80339 * 15 14 5 17 17 H 1.09003 * 109.47376 * 300.00580 * 1 2 3 18 18 H 1.09008 * 109.47093 * 60.00021 * 1 2 3 19 19 H 1.08996 * 109.47662 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47096 * 185.92651 * 3 2 1 21 21 H 1.09003 * 109.46753 * 305.92221 * 3 2 1 22 22 H 1.08994 * 109.47554 * 65.92181 * 3 2 1 23 23 H 1.09005 * 109.47435 * 300.00454 * 4 2 1 24 24 H 1.09008 * 109.47094 * 60.00626 * 4 2 1 25 25 H 1.08995 * 109.47362 * 179.97438 * 4 2 1 26 26 H 0.97008 * 119.99483 * 179.97438 * 9 8 6 27 27 H 1.09005 * 113.86522 * 251.07527 * 14 5 2 28 28 H 1.08994 * 113.86637 * 22.78109 * 14 5 2 29 29 H 1.09005 * 113.86354 * 270.04644 * 16 15 14 30 30 H 1.08994 * 113.97946 * 138.36046 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7211 1.2493 6 6 1.6770 -2.1837 1.2743 7 1 1.1125 -2.6140 0.4604 8 6 2.0659 -2.9723 2.3363 9 7 2.7538 -2.4484 3.3272 10 14 1.6155 -4.7850 2.3676 11 1 2.1475 -5.4058 3.6073 12 1 0.1378 -4.9285 2.3362 13 1 2.2038 -5.4617 1.1839 14 6 3.5210 -0.4422 1.5676 15 8 3.0818 -0.3178 2.9394 16 6 1.7309 0.0189 2.5644 17 1 -0.3634 0.5139 0.8899 18 1 -0.3634 0.5139 -0.8901 19 1 -0.3634 -1.0276 0.0005 20 1 3.1249 1.4443 -0.1061 21 1 1.5927 1.9860 -0.8323 22 1 1.7659 1.9248 0.9382 23 1 1.6766 -1.7491 -1.2490 24 1 1.6767 -0.2075 -2.1392 25 1 3.1299 -0.7210 -1.2494 26 1 3.0270 -3.0033 4.0745 27 1 4.1784 -1.2931 1.3884 28 1 3.8968 0.4867 1.1389 29 1 1.5616 1.0884 2.4393 30 1 0.9682 -0.4653 3.1742 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259354840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = -20.822223 kcal Electronic energy + Delta-G solvation = -12337.283006 eV Core-core repulsion = 10326.849648 eV Total energy + Delta-G solvation = -2010.433358 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.18545 -36.68358 -34.26389 -29.49351 -28.39861 -28.23547 -26.32980 -25.86743 -22.06893 -19.40204 -17.81728 -17.02424 -16.04409 -16.02911 -15.71026 -14.67313 -14.33294 -13.79025 -13.64074 -13.34300 -13.00443 -12.78041 -12.67292 -12.48441 -12.22601 -12.14560 -11.74570 -11.71960 -10.98235 -10.95367 -10.35213 -10.14015 -9.44593 -7.75031 -6.11292 1.43162 1.44066 1.50508 2.47325 3.22035 3.66281 4.18041 4.26666 4.38129 4.56582 4.66466 4.82784 4.91713 4.96018 5.03229 5.13111 5.18816 5.23576 5.25401 5.41410 5.44924 5.66059 5.71999 5.81751 5.88078 6.01571 6.19810 6.50503 6.99533 7.55481 9.04477 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.044920 B = 0.018598 C = 0.015439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.176682 B = 1505.161149 C = 1813.102114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.121 4.121 5 C 0.041 3.959 6 C -0.518 4.518 7 H 0.060 0.940 8 C 0.016 3.984 9 N -0.856 5.856 10 Si 0.937 3.063 11 H -0.293 1.293 12 H -0.273 1.273 13 H -0.273 1.273 14 C 0.028 3.972 15 O -0.352 6.352 16 C 0.031 3.969 17 H 0.042 0.958 18 H 0.063 0.937 19 H 0.041 0.959 20 H 0.051 0.949 21 H 0.068 0.932 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.245 0.755 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 4.819 -6.622 8.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.178 4.178 5 C 0.041 3.959 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.187 4.187 9 N -0.492 5.492 10 Si 0.764 3.236 11 H -0.220 1.220 12 H -0.198 1.198 13 H -0.198 1.198 14 C -0.049 4.049 15 O -0.269 6.269 16 C -0.047 4.047 17 H 0.061 0.939 18 H 0.082 0.918 19 H 0.060 0.940 20 H 0.070 0.930 21 H 0.087 0.913 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.210 4.741 -6.170 8.089 hybrid contribution -0.069 -1.246 0.456 1.328 sum -2.279 3.495 -5.714 7.075 Atomic orbital electron populations 1.21644 0.94713 1.00920 1.00642 1.20544 0.95781 0.94806 0.95471 1.22003 1.00686 0.95449 1.01544 1.21645 0.99943 0.99921 0.96308 1.20905 0.90508 0.94248 0.90268 1.20911 1.35718 0.93428 1.05478 0.92158 1.25876 0.95375 1.01458 0.95973 1.70789 1.35773 1.34275 1.08353 0.85958 0.78541 0.82149 0.76944 1.21953 1.19841 1.19840 1.24072 0.99763 0.96923 0.84181 1.89829 1.23485 1.89703 1.23864 1.23935 0.86461 0.96025 0.98301 0.93902 0.91822 0.94011 0.92969 0.91284 0.93229 0.93864 0.91996 0.94080 0.94517 0.94516 0.91835 0.92174 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.20 8.19 71.98 0.59 -3.61 16 2 C -0.07 -2.44 0.48 -52.18 -0.03 -2.47 16 3 C -0.14 -4.39 7.59 71.98 0.55 -3.85 16 4 C -0.12 -4.21 8.14 71.98 0.59 -3.62 16 5 C 0.04 1.94 0.50 -52.23 -0.03 1.91 16 6 C -0.52 -27.30 7.34 25.60 0.19 -27.12 16 7 H 0.06 3.12 6.25 -2.91 -0.02 3.10 16 8 C 0.02 0.90 5.20 84.66 0.44 1.34 16 9 N -0.86 -50.23 9.23 21.45 0.20 -50.03 16 10 Si 0.94 43.73 29.54 68.60 2.03 45.75 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.03 1.39 7.34 72.30 0.53 1.92 16 15 O -0.35 -19.36 9.42 -148.98 -1.40 -20.76 16 16 C 0.03 1.50 6.92 72.29 0.50 2.00 16 17 H 0.04 1.47 7.69 -2.39 -0.02 1.45 16 18 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 19 H 0.04 1.56 7.23 -2.39 -0.02 1.55 16 20 H 0.05 1.62 6.39 -2.39 -0.02 1.61 16 21 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.05 1.58 5.95 -2.39 -0.01 1.57 16 23 H 0.04 1.64 6.65 -2.38 -0.02 1.62 16 24 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.04 1.43 8.03 -2.39 -0.02 1.41 16 26 H 0.24 14.12 8.31 -92.70 -0.77 13.35 16 27 H 0.04 1.96 8.05 -2.38 -0.02 1.94 16 28 H 0.06 2.70 5.77 -2.39 -0.01 2.69 16 29 H 0.06 2.57 5.97 -2.38 -0.01 2.55 16 30 H 0.04 1.96 8.06 -2.39 -0.02 1.94 16 Total: -1.00 -60.22 229.97 5.26 -54.96 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.11 Total: 3.56 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.33 Total: -33.49 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.20 Total: -50.03 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.40 Total: -20.76 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -60.22 5.26 -54.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259354840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.139 kcal (2) G-P(sol) polarization free energy of solvation -60.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds