Wall clock time and date at job start Mon Mar 30 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.49393 * 2 1 4 4 C 1.54111 * 110.45931 * 122.90757 * 2 1 3 5 5 N 1.47050 * 103.86107 * 118.92939 * 4 2 1 6 6 C 1.37194 * 125.41086 * 179.87121 * 5 4 2 7 7 H 1.07992 * 120.00221 * 173.57111 * 6 5 4 8 8 C 1.38877 * 119.99839 * 353.84332 * 6 5 4 9 9 N 1.31480 * 119.99940 * 6.93627 * 8 6 5 10 10 Si 1.86797 * 120.00059 * 186.94107 * 8 6 5 11 11 H 1.48501 * 109.47257 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47024 * 120.00076 * 10 8 6 13 13 H 1.48501 * 109.47134 * 239.99859 * 10 8 6 14 14 C 1.33954 * 109.18252 * 359.60507 * 5 4 2 15 15 O 1.21579 * 123.04183 * 180.24703 * 14 5 4 16 16 N 1.33945 * 113.90915 * 0.26427 * 14 5 4 17 17 C 1.46505 * 125.40448 * 180.02562 * 16 14 5 18 18 H 1.09006 * 109.47203 * 181.24418 * 1 2 3 19 19 H 1.08991 * 109.47302 * 301.24814 * 1 2 3 20 20 H 1.09005 * 109.46816 * 61.25273 * 1 2 3 21 21 H 1.08997 * 110.65996 * 0.27582 * 4 2 1 22 22 H 1.09004 * 110.43734 * 237.46632 * 4 2 1 23 23 H 0.96997 * 119.99875 * 180.02562 * 9 8 6 24 24 H 1.08998 * 109.47542 * 359.97438 * 17 16 14 25 25 H 1.09005 * 109.46822 * 119.97809 * 17 16 14 26 26 H 1.09003 * 109.47077 * 239.97347 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9116 1.0210 0.0000 4 6 2.0687 -0.7844 1.2122 5 7 2.8389 -1.8817 0.6078 6 6 3.5154 -2.8537 1.3004 7 1 3.9672 -3.6790 0.7704 8 6 3.6142 -2.7794 2.6836 9 7 2.9475 -1.8568 3.3417 10 14 4.6944 -3.9901 3.6093 11 1 5.3335 -4.9210 2.6448 12 1 5.7454 -3.2486 4.3515 13 1 3.8634 -4.7627 4.5673 14 6 2.7703 -1.7847 -0.7265 15 8 3.3161 -2.5701 -1.4771 16 7 2.0462 -0.7440 -1.1586 17 6 1.8063 -0.4016 -2.5627 18 1 -0.3634 -1.0275 0.0223 19 1 -0.3633 0.5330 0.8785 20 1 -0.3633 0.4943 -0.9011 21 1 1.2476 -1.1780 1.8113 22 1 2.7164 -0.1509 1.8183 23 1 3.0168 -1.8047 4.3078 24 1 2.3090 -1.1253 -3.2043 25 1 0.7350 -0.4206 -2.7633 26 1 2.1962 0.5960 -2.7652 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259363559.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:30 Heat of formation + Delta-G solvation = -6.300496 kcal Electronic energy + Delta-G solvation = -11619.523185 eV Core-core repulsion = 9506.179193 eV Total energy + Delta-G solvation = -2113.343992 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.88113 -35.27231 -34.43066 -31.51643 -30.40475 -27.10030 -25.24428 -23.98759 -20.84295 -19.09479 -17.34052 -15.69043 -15.07484 -14.94072 -14.25038 -13.51016 -13.28196 -12.84939 -12.66758 -11.95956 -11.88329 -11.38709 -11.33630 -11.15764 -10.82556 -10.64299 -10.27905 -10.03260 -9.04256 -8.75260 -7.99094 -7.60680 -6.24515 -3.70571 3.22128 3.29626 3.36072 3.71914 4.29630 4.35288 5.25721 5.34293 5.37141 5.57466 5.63439 5.83721 6.00283 6.13150 6.15382 6.23923 6.51855 6.84457 7.07616 7.32741 7.58692 7.76481 8.34067 8.70525 9.30169 9.49698 10.24904 10.86014 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.059893 B = 0.014345 C = 0.011957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.391791 B = 1951.442962 C = 2341.127640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.105 3.895 3 H 0.071 0.929 4 C 0.138 3.862 5 N -0.472 5.472 6 C -0.274 4.274 7 H 0.102 0.898 8 C 0.021 3.979 9 N -0.901 5.901 10 Si 0.932 3.068 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.650 3.350 15 O -0.629 6.629 16 N -0.649 5.649 17 C 0.129 3.871 18 H 0.058 0.942 19 H 0.065 0.935 20 H 0.050 0.950 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.266 0.734 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 5.420 -2.735 7.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.000 4.000 3 H 0.088 0.912 4 C 0.014 3.986 5 N -0.195 5.195 6 C -0.401 4.401 7 H 0.120 0.880 8 C -0.180 4.180 9 N -0.543 5.543 10 Si 0.759 3.241 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.209 1.209 14 C 0.353 3.647 15 O -0.513 6.513 16 N -0.390 5.390 17 C -0.014 4.014 18 H 0.077 0.923 19 H 0.084 0.916 20 H 0.069 0.931 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.083 4.978 -2.940 7.077 hybrid contribution 0.322 -0.323 0.649 0.793 sum -3.761 4.654 -2.291 6.407 Atomic orbital electron populations 1.22080 0.95399 1.02266 1.01299 1.22174 0.94237 0.96460 0.87117 0.91152 1.22176 0.96302 0.88546 0.91588 1.42795 1.47662 1.26439 1.02616 1.19476 1.29085 1.02486 0.89083 0.87981 1.25183 0.98082 0.98342 0.96347 1.69896 1.41499 1.34720 1.08214 0.85763 0.79472 0.79683 0.79199 1.19395 1.20770 1.20896 1.15838 0.82547 0.82632 0.83690 1.90712 1.55304 1.47112 1.58143 1.46976 1.56339 1.30589 1.05059 1.21071 0.99697 0.99949 0.80705 0.92323 0.91619 0.93057 0.90322 0.90144 0.92423 0.90465 0.93693 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.17 37.16 0.34 -1.99 15 2 C 0.11 1.98 4.07 -67.05 -0.27 1.71 15 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 4 C 0.14 3.21 5.29 -3.16 -0.02 3.20 15 5 N -0.47 -12.99 3.07 -119.61 -0.37 -13.36 15 6 C -0.27 -7.95 9.92 -14.92 -0.15 -8.10 15 7 H 0.10 3.06 7.68 -52.49 -0.40 2.66 15 8 C 0.02 0.56 5.48 -17.47 -0.10 0.47 15 9 N -0.90 -24.33 10.40 55.49 0.58 -23.76 15 10 Si 0.93 21.28 29.56 -169.99 -5.02 16.26 15 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 13 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 14 C 0.65 17.49 8.24 -88.39 -0.73 16.76 15 15 O -0.63 -18.90 16.78 5.30 0.09 -18.81 15 16 N -0.65 -13.86 3.09 -179.10 -0.55 -14.41 15 17 C 0.13 2.15 10.95 59.85 0.66 2.81 15 18 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 19 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.05 0.68 7.90 -51.93 -0.41 0.27 15 21 H 0.08 1.89 7.25 -51.93 -0.38 1.51 15 22 H 0.08 1.95 7.36 -51.93 -0.38 1.57 15 23 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 24 H 0.08 1.38 7.52 -51.93 -0.39 0.99 15 25 H 0.04 0.64 7.93 -51.93 -0.41 0.22 15 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 LS Contribution 223.85 15.07 3.37 3.37 Total: -1.00 -32.48 223.85 -5.37 -37.85 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -3.20 Total: -2.00 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -0.27 Total: 14.86 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.34 Total: -51.53 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.09 Total: -18.81 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -32.48 -5.37 -37.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363559.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.546 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds