Wall clock time and date at job start Mon Mar 30 2020 02:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 110.49809 * 2 1 4 4 C 1.54106 * 110.66845 * 237.21324 * 2 1 3 5 5 N 1.47053 * 103.86458 * 241.34931 * 4 2 1 6 6 C 1.37192 * 125.41222 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00067 * 174.22962 * 6 5 4 8 8 C 1.38876 * 119.99735 * 354.23004 * 6 5 4 9 9 N 1.31473 * 120.00408 * 6.94776 * 8 6 5 10 10 Si 1.86803 * 120.00147 * 186.94908 * 8 6 5 11 11 H 1.48506 * 109.47072 * 89.99500 * 10 8 6 12 12 H 1.48492 * 109.47342 * 209.99732 * 10 8 6 13 13 H 1.48509 * 109.46827 * 330.00130 * 10 8 6 14 14 C 1.33949 * 109.17804 * 359.73783 * 5 4 2 15 15 O 1.21581 * 123.04194 * 180.26370 * 14 5 4 16 16 N 1.33941 * 113.91536 * 0.46716 * 14 5 4 17 17 C 1.46503 * 125.41293 * 179.78950 * 16 14 5 18 18 H 1.09000 * 109.46686 * 298.75542 * 1 2 3 19 19 H 1.09003 * 109.47196 * 58.74562 * 1 2 3 20 20 H 1.09000 * 109.47416 * 178.75060 * 1 2 3 21 21 H 1.09001 * 110.55136 * 359.94645 * 4 2 1 22 22 H 1.09001 * 110.54528 * 122.75868 * 4 2 1 23 23 H 0.96999 * 120.00183 * 180.02562 * 9 8 6 24 24 H 1.08994 * 109.47413 * 269.70060 * 17 16 14 25 25 H 1.09009 * 109.46744 * 29.70156 * 17 16 14 26 26 H 1.09000 * 109.47241 * 149.69857 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9117 1.0209 0.0000 4 6 2.0739 -0.7808 -1.2122 5 7 2.8388 -1.8818 -0.6078 6 6 3.5156 -2.8536 -1.3004 7 1 4.1267 -3.5686 -0.7696 8 6 3.4150 -2.9178 -2.6840 9 7 2.7847 -1.9700 -3.3420 10 14 4.1750 -4.3509 -3.6103 11 1 3.1778 -5.4442 -3.7353 12 1 4.5894 -3.9017 -4.9636 13 1 5.3621 -4.8463 -2.8680 14 6 2.7749 -1.7815 0.7264 15 8 3.3252 -2.5636 1.4771 16 7 2.0462 -0.7441 1.1587 17 6 1.8065 -0.4014 2.5627 18 1 -0.3633 0.4944 0.9010 19 1 -0.3634 0.5332 -0.8785 20 1 -0.3634 -1.0274 -0.0224 21 1 1.2540 -1.1705 -1.8155 22 1 2.7257 -0.1474 -1.8140 23 1 2.7141 -2.0151 -4.3084 24 1 0.9033 -0.9030 2.9101 25 1 2.6558 -0.7235 3.1654 26 1 1.6822 0.6774 2.6574 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259363560.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:32 Heat of formation + Delta-G solvation = -6.092493 kcal Electronic energy + Delta-G solvation = -11621.626520 eV Core-core repulsion = 9508.291547 eV Total energy + Delta-G solvation = -2113.334972 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.87508 -35.26435 -34.42547 -31.51387 -30.40881 -27.09009 -25.25438 -23.98303 -20.84677 -19.10062 -17.34033 -15.63961 -15.06482 -14.98586 -14.23847 -13.47497 -13.25404 -12.87170 -12.65645 -12.01236 -11.87890 -11.41234 -11.34741 -11.12491 -10.81229 -10.63712 -10.30667 -10.04510 -9.03482 -8.73858 -7.98906 -7.60209 -6.24020 -3.70124 3.24044 3.29626 3.34072 3.71883 4.30123 4.35480 5.25945 5.35008 5.36471 5.54940 5.63671 5.80758 6.02636 6.14165 6.15825 6.23055 6.52163 6.83885 7.07970 7.33084 7.58618 7.76544 8.34242 8.70926 9.30528 9.50098 10.25395 10.86451 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.059235 B = 0.014407 C = 0.012029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.580234 B = 1943.034400 C = 2327.184766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.105 3.895 3 H 0.070 0.930 4 C 0.138 3.862 5 N -0.472 5.472 6 C -0.275 4.275 7 H 0.102 0.898 8 C 0.021 3.979 9 N -0.902 5.902 10 Si 0.932 3.068 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.650 3.350 15 O -0.628 6.628 16 N -0.649 5.649 17 C 0.133 3.867 18 H 0.050 0.950 19 H 0.065 0.935 20 H 0.058 0.942 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.266 0.734 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 5.505 2.692 7.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.000 4.000 3 H 0.088 0.912 4 C 0.014 3.986 5 N -0.195 5.195 6 C -0.402 4.402 7 H 0.120 0.880 8 C -0.179 4.179 9 N -0.544 5.544 10 Si 0.760 3.240 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.353 3.647 15 O -0.512 6.512 16 N -0.390 5.390 17 C -0.010 4.010 18 H 0.069 0.931 19 H 0.083 0.917 20 H 0.077 0.923 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.182 5.055 2.894 7.171 hybrid contribution 0.186 -0.448 -0.632 0.797 sum -3.996 4.608 2.261 6.505 Atomic orbital electron populations 1.22080 0.95307 1.02297 1.01266 1.22187 0.94297 0.96370 0.87147 0.91230 1.22170 0.96573 0.88280 0.91586 1.42786 1.48034 1.26089 1.02611 1.19432 1.24824 1.06909 0.89035 0.88024 1.25175 0.97996 0.98419 0.96330 1.69884 1.44089 1.32123 1.08262 0.85820 0.79122 0.80665 0.78434 1.20510 1.21022 1.19589 1.15826 0.82557 0.82652 0.83674 1.90715 1.55142 1.47197 1.58170 1.46994 1.56070 1.30938 1.05029 1.21034 1.00706 0.98821 0.80462 0.93070 0.91650 0.92300 0.89854 0.90614 0.92373 0.94255 0.91462 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.20 37.16 0.34 -1.98 15 2 C 0.11 1.97 4.06 -67.05 -0.27 1.70 15 3 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 4 C 0.14 3.22 5.30 -3.16 -0.02 3.20 15 5 N -0.47 -13.00 3.07 -119.61 -0.37 -13.37 15 6 C -0.27 -7.98 9.92 -14.92 -0.15 -8.13 15 7 H 0.10 3.05 7.68 -52.49 -0.40 2.65 15 8 C 0.02 0.57 5.48 -17.47 -0.10 0.48 15 9 N -0.90 -24.35 10.40 55.49 0.58 -23.77 15 10 Si 0.93 21.31 29.56 -169.99 -5.02 16.29 15 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 15 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 13 H -0.27 -6.18 7.11 56.52 0.40 -5.77 15 14 C 0.65 17.52 8.24 -88.40 -0.73 16.80 15 15 O -0.63 -18.96 17.01 5.29 0.09 -18.87 15 16 N -0.65 -13.87 3.09 -179.11 -0.55 -14.42 15 17 C 0.13 2.22 10.76 59.85 0.64 2.86 15 18 H 0.05 0.67 8.10 -51.93 -0.42 0.25 15 19 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.08 2.01 6.98 -51.93 -0.36 1.65 15 22 H 0.08 1.82 7.63 -51.93 -0.40 1.43 15 23 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.07 1.17 7.91 -51.92 -0.41 0.76 15 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 LS Contribution 224.71 15.07 3.39 3.39 Total: -1.00 -32.58 224.71 -5.41 -37.99 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -3.24 Total: -2.16 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -0.28 Total: 14.93 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.34 Total: -51.56 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.09 Total: -18.87 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -32.58 -5.41 -37.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259363560.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.898 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds