Wall clock time and date at job start Mon Mar 30 2020 02:08:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08992 * 110.49809 * 2 1
4 4 C 1.54106 * 110.66845 * 237.21324 * 2 1 3
5 5 N 1.47053 * 103.86458 * 241.34931 * 4 2 1
6 6 C 1.37192 * 125.41222 * 180.02562 * 5 4 2
7 7 H 1.07998 * 120.00067 * 174.22962 * 6 5 4
8 8 C 1.38876 * 119.99735 * 354.23004 * 6 5 4
9 9 N 1.31473 * 120.00408 * 6.94776 * 8 6 5
10 10 Si 1.86803 * 120.00147 * 186.94908 * 8 6 5
11 11 H 1.48506 * 109.47072 * 89.99500 * 10 8 6
12 12 H 1.48492 * 109.47342 * 209.99732 * 10 8 6
13 13 H 1.48509 * 109.46827 * 330.00130 * 10 8 6
14 14 C 1.33949 * 109.17804 * 359.73783 * 5 4 2
15 15 O 1.21581 * 123.04194 * 180.26370 * 14 5 4
16 16 N 1.33941 * 113.91536 * 0.46716 * 14 5 4
17 17 C 1.46503 * 125.41293 * 179.78950 * 16 14 5
18 18 H 1.09000 * 109.46686 * 298.75542 * 1 2 3
19 19 H 1.09003 * 109.47196 * 58.74562 * 1 2 3
20 20 H 1.09000 * 109.47416 * 178.75060 * 1 2 3
21 21 H 1.09001 * 110.55136 * 359.94645 * 4 2 1
22 22 H 1.09001 * 110.54528 * 122.75868 * 4 2 1
23 23 H 0.96999 * 120.00183 * 180.02562 * 9 8 6
24 24 H 1.08994 * 109.47413 * 269.70060 * 17 16 14
25 25 H 1.09009 * 109.46744 * 29.70156 * 17 16 14
26 26 H 1.09000 * 109.47241 * 149.69857 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9117 1.0209 0.0000
4 6 2.0739 -0.7808 -1.2122
5 7 2.8388 -1.8818 -0.6078
6 6 3.5156 -2.8536 -1.3004
7 1 4.1267 -3.5686 -0.7696
8 6 3.4150 -2.9178 -2.6840
9 7 2.7847 -1.9700 -3.3420
10 14 4.1750 -4.3509 -3.6103
11 1 3.1778 -5.4442 -3.7353
12 1 4.5894 -3.9017 -4.9636
13 1 5.3621 -4.8463 -2.8680
14 6 2.7749 -1.7815 0.7264
15 8 3.3252 -2.5636 1.4771
16 7 2.0462 -0.7441 1.1587
17 6 1.8065 -0.4014 2.5627
18 1 -0.3633 0.4944 0.9010
19 1 -0.3634 0.5332 -0.8785
20 1 -0.3634 -1.0274 -0.0224
21 1 1.2540 -1.1705 -1.8155
22 1 2.7257 -0.1474 -1.8140
23 1 2.7141 -2.0151 -4.3084
24 1 0.9033 -0.9030 2.9101
25 1 2.6558 -0.7235 3.1654
26 1 1.6822 0.6774 2.6574
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259363560.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:08:32
Heat of formation + Delta-G solvation = -28.547470 kcal
Electronic energy + Delta-G solvation = -11622.600241 eV
Core-core repulsion = 9508.291547 eV
Total energy + Delta-G solvation = -2114.308693 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 184.095 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-41.74407 -37.27810 -36.32331 -33.49756 -32.00412 -28.82481 -26.93928 -25.84825
-22.53451 -20.96368 -19.37211 -17.47351 -16.98671 -16.84203 -16.05210 -15.21103
-14.96208 -14.61302 -14.34249 -13.64153 -13.28625 -13.24556 -12.98756 -12.69255
-12.55512 -12.41578 -12.10990 -11.84908 -11.07170 -10.86367 -10.00478 -9.37507
-8.32530 -5.86915 1.41101 1.42198 1.54239 2.02019 2.32237 2.42538
3.17994 3.57423 3.77998 4.15357 4.20190 4.44285 4.72503 4.85639
4.88276 4.95716 5.04665 5.16304 5.39410 5.41324 5.54106 6.04151
6.29013 6.68361 7.22561 7.45696 8.19361 8.75991
Molecular weight = 184.10amu
Principal moments of inertia in cm(-1)
A = 0.059235 B = 0.014407 C = 0.012029
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 472.580234 B = 1943.034400 C = 2327.184766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.111 3.889
3 H 0.103 0.897
4 C 0.140 3.860
5 N -0.492 5.492
6 C -0.322 4.322
7 H 0.075 0.925
8 C -0.009 4.009
9 N -0.909 5.909
10 Si 0.999 3.001
11 H -0.272 1.272
12 H -0.268 1.268
13 H -0.274 1.274
14 C 0.633 3.367
15 O -0.676 6.676
16 N -0.644 5.644
17 C 0.126 3.874
18 H 0.083 0.917
19 H 0.088 0.912
20 H 0.036 0.964
21 H 0.069 0.931
22 H 0.061 0.939
23 H 0.274 0.726
24 H 0.054 0.946
25 H 0.051 0.949
26 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.567 6.743 2.264 9.032
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.007 3.993
3 H 0.121 0.879
4 C 0.017 3.983
5 N -0.216 5.216
6 C -0.449 4.449
7 H 0.093 0.907
8 C -0.209 4.209
9 N -0.549 5.549
10 Si 0.822 3.178
11 H -0.197 1.197
12 H -0.193 1.193
13 H -0.199 1.199
14 C 0.335 3.665
15 O -0.564 6.564
16 N -0.384 5.384
17 C -0.015 4.015
18 H 0.102 0.898
19 H 0.107 0.893
20 H 0.055 0.945
21 H 0.088 0.912
22 H 0.079 0.921
23 H 0.083 0.917
24 H 0.073 0.927
25 H 0.070 0.930
26 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -5.303 6.360 2.467 8.640
hybrid contribution 0.502 -0.784 -0.515 1.064
sum -4.800 5.576 1.952 7.612
Atomic orbital electron populations
1.22017 0.92129 1.01718 1.04034 1.22365 0.96607 0.96481 0.83837
0.87908 1.22160 0.95368 0.87336 0.93463 1.43031 1.48375 1.26854
1.03295 1.19418 1.26941 1.08420 0.90115 0.90680 1.26005 0.97876
1.00738 0.96279 1.69980 1.43369 1.32693 1.08839 0.84852 0.78202
0.77398 0.77342 1.19727 1.19253 1.19892 1.16286 0.83075 0.83665
0.83443 1.90647 1.57222 1.49315 1.59171 1.47169 1.54629 1.29273
1.07372 1.21376 1.00708 1.01899 0.77556 0.89836 0.89339 0.94524
0.91235 0.92113 0.91669 0.92709 0.92972 0.87799
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.83 9.20 71.98 0.66 -3.17 15
2 C 0.11 3.90 4.06 45.26 0.18 4.08 15
3 H 0.10 3.00 8.14 -2.39 -0.02 2.98 15
4 C 0.14 6.52 5.30 86.65 0.46 6.98 15
5 N -0.49 -27.84 3.07 -651.06 -2.00 -29.84 15
6 C -0.32 -19.36 9.92 84.01 0.83 -18.53 15
7 H 0.08 4.77 7.68 -2.91 -0.02 4.75 15
8 C -0.01 -0.50 5.48 84.90 0.47 -0.04 15
9 N -0.91 -48.86 10.40 21.65 0.23 -48.64 15
10 Si 1.00 43.69 29.56 68.60 2.03 45.72 15
11 H -0.27 -11.56 7.11 99.48 0.71 -10.86 15
12 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15
13 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15
14 C 0.63 34.84 8.24 179.57 1.48 36.32 15
15 O -0.68 -42.33 17.01 -3.97 -0.07 -42.39 15
16 N -0.64 -26.66 3.09 -839.31 -2.59 -29.25 15
17 C 0.13 3.87 10.76 127.77 1.37 5.24 15
18 H 0.08 1.77 8.10 -2.39 -0.02 1.75 15
19 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15
20 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15
21 H 0.07 3.36 6.98 -2.39 -0.02 3.34 15
22 H 0.06 2.94 7.63 -2.39 -0.02 2.92 15
23 H 0.27 13.70 8.31 -92.71 -0.77 12.93 15
24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 15
25 H 0.05 1.76 7.91 -2.38 -0.02 1.75 15
26 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15
Total: -1.00 -72.89 224.71 4.21 -68.68
By element:
Atomic # 1 Polarization: 3.68 SS G_CDS: 1.16 Total: 4.84 kcal
Atomic # 6 Polarization: 25.43 SS G_CDS: 5.46 Total: 30.89 kcal
Atomic # 7 Polarization: -103.37 SS G_CDS: -4.37 Total: -107.73 kcal
Atomic # 8 Polarization: -42.33 SS G_CDS: -0.07 Total: -42.39 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal
Total: -72.89 4.21 -68.68 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259363560.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.128 kcal
(2) G-P(sol) polarization free energy of solvation -72.886 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.757 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.676 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.547 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds