Wall clock time and date at job start Mon Mar 30 2020 02:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00314 * 2 1 4 4 H 1.48502 * 109.46978 * 270.00093 * 3 2 1 5 5 H 1.48504 * 109.47044 * 29.99497 * 3 2 1 6 6 H 1.48504 * 109.47479 * 149.99707 * 3 2 1 7 7 C 1.37877 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00252 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.23023 * 59.40922 * 9 7 2 11 11 C 1.53138 * 109.20139 * 178.81641 * 9 7 2 12 12 C 1.51487 * 108.37633 * 204.43278 * 11 9 7 13 13 O 1.21284 * 120.05370 * 110.01791 * 12 11 9 14 14 N 1.33636 * 119.89782 * 289.99664 * 12 11 9 15 15 C 1.47254 * 120.10417 * 359.76402 * 14 12 11 16 16 C 1.53015 * 108.58602 * 70.66149 * 15 14 12 17 17 N 1.45563 * 110.86018 * 274.28073 * 16 15 14 18 18 H 0.97002 * 119.99715 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.68196 * 324.15580 * 11 9 7 20 20 H 1.09001 * 109.68217 * 84.71124 * 11 9 7 21 21 H 0.96996 * 119.94838 * 179.73275 * 14 12 11 22 22 H 1.09001 * 109.62358 * 190.38638 * 15 14 12 23 23 H 1.09002 * 109.61941 * 310.94071 * 15 14 12 24 24 H 1.09006 * 109.20408 * 153.91978 * 16 15 14 25 25 H 1.09005 * 109.19558 * 34.63205 * 16 15 14 26 26 H 1.00895 * 110.99608 * 300.53055 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6183 -2.5484 -0.8856 11 6 2.2513 -3.6583 -0.0287 12 6 1.5621 -4.8691 -0.6236 13 8 1.8805 -5.2701 -1.7231 14 7 0.6030 -5.4949 0.0650 15 6 0.2193 -5.0125 1.4024 16 6 -0.5217 -3.6828 1.2471 17 7 0.4157 -2.5706 1.1908 18 1 -0.4850 0.8401 -0.0004 19 1 3.1103 -3.3865 -0.6421 20 1 2.5806 -3.8847 0.9854 21 1 0.1585 -6.2679 -0.3168 22 1 -0.4342 -5.7418 1.8810 23 1 1.1132 -4.8646 2.0084 24 1 -1.1916 -3.5444 2.0958 25 1 -1.1080 -3.7043 0.3284 26 1 0.9758 -2.5270 2.0288 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259543979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:04 Heat of formation + Delta-G solvation = -61.024328 kcal Electronic energy + Delta-G solvation = -11547.341804 eV Core-core repulsion = 9431.624809 eV Total energy + Delta-G solvation = -2115.716996 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.05979 -37.98322 -35.68570 -33.78769 -32.13284 -28.08721 -27.47398 -24.11731 -22.28307 -20.67560 -18.89227 -18.20385 -17.26328 -16.56750 -16.00256 -15.56628 -15.21859 -14.68405 -14.08517 -13.89110 -13.44691 -12.98373 -12.84322 -12.66239 -12.33977 -12.11703 -11.68151 -11.16866 -10.76948 -10.50689 -10.28592 -8.49170 -7.95546 -6.18689 1.47492 1.48991 1.57432 1.63589 2.42525 2.50740 3.23105 3.74715 3.89752 4.25140 4.35832 4.39858 4.51959 4.65324 4.86223 5.02045 5.22486 5.40971 5.78609 5.95147 6.19359 6.20951 6.71659 7.19743 7.21145 7.26828 7.54725 9.06640 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.058173 B = 0.013306 C = 0.011681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.204167 B = 2103.815279 C = 2396.468939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.036 3.964 3 Si 0.951 3.049 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.253 3.747 10 H -0.013 1.013 11 C -0.156 4.156 12 C 0.515 3.485 13 O -0.610 6.610 14 N -0.715 5.715 15 C 0.076 3.924 16 C 0.052 3.948 17 N -0.687 5.687 18 H 0.255 0.745 19 H 0.075 0.925 20 H 0.100 0.900 21 H 0.403 0.597 22 H 0.126 0.874 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.039 0.961 26 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -7.376 6.704 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.168 4.168 3 Si 0.777 3.223 4 H -0.210 1.210 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.593 4.593 8 H 0.075 0.925 9 C 0.144 3.856 10 H 0.005 0.995 11 C -0.199 4.199 12 C 0.303 3.697 13 O -0.493 6.493 14 N -0.366 5.366 15 C -0.050 4.050 16 C -0.078 4.078 17 N -0.318 5.318 18 H 0.064 0.936 19 H 0.094 0.906 20 H 0.118 0.882 21 H 0.240 0.760 22 H 0.144 0.856 23 H 0.100 0.900 24 H 0.113 0.887 25 H 0.058 0.942 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.830 -6.916 5.980 9.181 hybrid contribution 0.656 0.009 -0.287 0.716 sum -0.174 -6.907 5.693 8.952 Atomic orbital electron populations 1.70225 1.07128 1.26438 1.47728 1.25682 0.95420 1.01914 0.93764 0.85705 0.78989 0.79854 0.77788 1.20971 1.20982 1.18988 1.21346 0.92619 0.91281 1.54021 0.92541 1.18297 0.87952 0.90452 0.88930 0.99474 1.22877 1.00901 0.93887 1.02220 1.21202 0.79791 0.84215 0.84496 1.90629 1.67261 1.68594 1.22849 1.45963 1.38059 1.32688 1.19877 1.22965 1.01169 0.98609 0.82229 1.22191 0.95744 0.88142 1.01769 1.58138 1.25077 1.44023 1.04512 0.93570 0.90613 0.88207 0.76029 0.85608 0.90034 0.88718 0.94206 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.57 12.76 21.45 0.27 -50.30 15 2 C 0.04 1.97 5.38 84.65 0.46 2.43 15 3 Si 0.95 42.96 29.54 68.60 2.03 44.98 15 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 15 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 7 C -0.55 -29.82 8.60 25.60 0.22 -29.60 15 8 H 0.06 2.97 7.64 -2.91 -0.02 2.95 15 9 C 0.25 12.35 2.08 44.46 0.09 12.44 15 10 H -0.01 -0.74 7.87 -2.39 -0.02 -0.76 15 11 C -0.16 -6.48 5.00 30.15 0.15 -6.33 15 12 C 0.51 20.97 7.10 88.09 0.63 21.60 15 13 O -0.61 -29.60 17.93 -3.04 -0.05 -29.66 15 14 N -0.71 -21.81 5.31 -461.99 -2.45 -24.27 15 15 C 0.08 1.82 6.50 86.24 0.56 2.38 15 16 C 0.05 1.70 6.37 86.56 0.55 2.25 15 17 N -0.69 -29.09 5.28 -501.20 -2.65 -31.74 15 18 H 0.26 14.05 8.31 -92.71 -0.77 13.28 15 19 H 0.08 3.35 7.83 -2.39 -0.02 3.33 15 20 H 0.10 3.48 6.99 -2.39 -0.02 3.47 15 21 H 0.40 10.61 8.92 -92.71 -0.83 9.78 15 22 H 0.13 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.08 1.87 6.94 -2.39 -0.02 1.85 15 24 H 0.09 2.60 8.14 -2.38 -0.02 2.58 15 25 H 0.04 1.51 8.05 -2.38 -0.02 1.49 15 26 H 0.34 13.01 8.62 -89.70 -0.77 12.24 15 Total: -1.00 -67.90 220.63 -0.60 -68.50 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -0.40 Total: 17.31 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 2.66 Total: 5.17 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -4.83 Total: -106.30 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.05 Total: -29.66 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -67.90 -0.60 -68.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259543979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.478 kcal (2) G-P(sol) polarization free energy of solvation -67.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds