Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.60840 * 2 1 4 4 C 1.54105 * 110.54844 * 237.21621 * 2 1 3 5 5 N 1.47057 * 103.99235 * 241.47875 * 4 2 1 6 6 C 1.46497 * 125.40952 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.46959 * 90.00267 * 6 5 4 8 8 H 1.07996 * 120.00422 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99795 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00125 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99904 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47241 * 90.00577 * 11 9 7 13 13 H 1.48504 * 109.46916 * 210.00474 * 11 9 7 14 14 H 1.48499 * 109.47179 * 330.00168 * 11 9 7 15 15 C 1.33947 * 109.17664 * 359.93233 * 5 4 2 16 16 O 1.21594 * 123.04158 * 179.97438 * 15 5 4 17 17 N 1.33947 * 113.91995 * 359.97438 * 15 5 4 18 18 H 1.09002 * 109.47149 * 182.78380 * 1 2 3 19 19 H 1.09006 * 109.46910 * 302.78094 * 1 2 3 20 20 H 1.08996 * 109.47315 * 62.78265 * 1 2 3 21 21 H 1.09002 * 110.54852 * 122.81186 * 4 2 1 22 22 H 1.08997 * 110.54955 * 0.14609 * 4 2 1 23 23 H 1.09000 * 109.47188 * 210.00385 * 6 5 4 24 24 H 1.09001 * 109.47302 * 329.99708 * 6 5 4 25 25 H 0.97001 * 120.00375 * 179.97438 * 10 9 7 26 26 H 0.97000 * 125.41247 * 180.02562 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9136 1.0202 0.0000 4 6 2.0709 -0.7813 -1.2132 5 7 2.8337 -1.8862 -0.6131 6 6 3.5511 -2.9246 -1.3569 7 6 4.9662 -2.4732 -1.6114 8 1 5.2979 -1.5092 -1.2552 9 6 5.8372 -3.2907 -2.3000 10 7 7.0721 -2.8967 -2.5225 11 14 5.2634 -4.9579 -2.9168 12 1 4.7073 -4.8146 -4.2862 13 1 6.4129 -5.8977 -2.9452 14 1 4.2138 -5.4871 -2.0092 15 6 2.7690 -1.7917 0.7214 16 8 3.3135 -2.5810 1.4691 17 7 2.0503 -0.7491 1.1579 18 1 -0.3633 -1.0265 0.0499 19 1 -0.3633 0.5564 0.8641 20 1 -0.3634 0.4700 -0.9138 21 1 2.7231 -0.1490 -1.8156 22 1 1.2495 -1.1671 -1.8169 23 1 3.5628 -3.8461 -0.7748 24 1 3.0497 -3.1023 -2.3083 25 1 7.6850 -3.4719 -3.0066 26 1 1.8954 -0.5233 2.0884 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259546784.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = -16.998335 kcal Electronic energy + Delta-G solvation = -11305.112732 eV Core-core repulsion = 9191.304847 eV Total energy + Delta-G solvation = -2113.807885 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.32119 -35.88060 -34.12629 -32.18368 -30.43777 -28.29201 -25.52958 -22.67809 -21.39431 -19.42924 -17.11021 -16.88039 -15.74205 -15.11377 -14.17130 -13.98472 -13.68287 -13.23477 -12.59114 -12.45485 -12.32750 -11.81400 -11.64204 -11.20849 -10.86715 -10.50127 -10.09813 -9.54460 -9.34179 -8.75152 -8.58799 -7.61859 -6.07906 -4.07026 3.27308 3.31592 3.40259 3.41441 3.93680 4.40069 4.50964 4.68059 5.06669 5.18245 5.24724 5.60838 5.72932 5.78622 5.93536 6.18664 6.24436 6.78199 7.07596 7.53848 7.62395 7.66036 8.36934 8.50117 8.96149 9.36749 9.53657 11.05599 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.061432 B = 0.011567 C = 0.011246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.681153 B = 2420.016346 C = 2489.245454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.085 0.915 4 C 0.097 3.903 5 N -0.610 5.610 6 C 0.248 3.752 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.072 3.928 10 N -0.897 5.897 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.263 1.263 15 C 0.695 3.305 16 O -0.592 6.592 17 N -0.750 5.750 18 H 0.061 0.939 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.029 0.971 25 H 0.265 0.735 26 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 5.625 1.363 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.012 3.988 3 H 0.103 0.897 4 C -0.028 4.028 5 N -0.347 5.347 6 C 0.128 3.872 7 C -0.572 4.572 8 H 0.093 0.907 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.188 1.188 15 C 0.395 3.605 16 O -0.470 6.470 17 N -0.413 5.413 18 H 0.080 0.920 19 H 0.078 0.922 20 H 0.088 0.912 21 H 0.098 0.902 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.075 0.925 26 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.790 5.007 1.513 13.819 hybrid contribution -0.191 -0.561 -0.080 0.598 sum -12.981 4.446 1.433 13.796 Atomic orbital electron populations 1.22165 0.94517 1.02670 1.02298 1.21902 0.94362 0.96510 0.86007 0.89724 1.22325 0.95770 0.89478 0.95178 1.47306 1.53417 1.29386 1.04571 1.19444 0.91687 0.85689 0.90376 1.21412 0.94114 1.05649 1.36050 0.90671 1.24857 0.94685 0.97993 0.95503 1.69896 1.04929 1.37563 1.41145 0.86858 0.79014 0.84433 0.79518 1.20001 1.20845 1.18775 1.15946 0.79423 0.81633 0.83454 1.90899 1.52288 1.45748 1.58056 1.45340 1.57261 1.30470 1.08226 0.92021 0.92229 0.91182 0.90161 0.90898 0.94147 0.95335 0.92514 0.74077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.41 37.16 0.35 -1.15 15 2 C 0.12 1.52 4.40 -66.87 -0.29 1.22 15 3 H 0.08 0.94 8.14 -51.93 -0.42 0.51 15 4 C 0.10 1.54 7.32 -3.16 -0.02 1.52 15 5 N -0.61 -13.44 2.94 -180.19 -0.53 -13.97 15 6 C 0.25 6.25 4.82 -5.20 -0.03 6.23 15 7 C -0.53 -15.72 9.94 -34.44 -0.34 -16.06 15 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 15 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 10 N -0.90 -27.95 13.96 55.43 0.77 -27.18 15 11 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 15 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 14 H -0.26 -6.32 6.54 56.52 0.37 -5.95 15 15 C 0.70 15.61 8.60 -88.40 -0.76 14.85 15 16 O -0.59 -16.04 17.53 5.28 0.09 -15.94 15 17 N -0.75 -12.18 6.05 -57.98 -0.35 -12.53 15 18 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.06 0.48 8.14 -51.93 -0.42 0.06 15 20 H 0.07 0.54 8.14 -51.93 -0.42 0.11 15 21 H 0.08 1.28 8.14 -51.93 -0.42 0.85 15 22 H 0.07 0.99 7.73 -51.93 -0.40 0.59 15 23 H 0.04 1.09 6.97 -51.93 -0.36 0.73 15 24 H 0.03 0.66 7.57 -51.93 -0.39 0.27 15 25 H 0.26 7.67 8.31 -40.82 -0.34 7.34 15 26 H 0.42 5.72 8.96 -40.82 -0.37 5.36 15 LS Contribution 226.98 15.07 3.42 3.42 Total: -1.00 -35.45 226.98 -5.68 -41.13 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -3.23 Total: -0.45 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -1.19 Total: 8.64 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.11 Total: -53.68 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -35.45 -5.68 -41.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546784.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.130 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds