Wall clock time and date at job start Mon Mar 30 2020 01:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.53070 * 2 1 4 4 O 1.42958 * 109.48811 * 239.92182 * 2 1 3 5 5 C 1.42893 * 114.45260 * 175.15029 * 4 2 1 6 6 C 1.53361 * 109.31111 * 64.90417 * 5 4 2 7 7 C 1.51513 * 108.09680 * 307.72431 * 6 5 4 8 8 O 1.20757 * 121.21703 * 228.44180 * 7 6 5 9 9 C 1.51516 * 117.57213 * 48.41367 * 7 6 5 10 10 H 1.08997 * 109.73336 * 71.28034 * 9 7 6 11 11 C 1.50690 * 109.73771 * 191.93500 * 9 7 6 12 12 H 1.08002 * 120.00431 * 120.00134 * 11 9 7 13 13 C 1.37880 * 120.00031 * 300.00069 * 11 9 7 14 14 N 1.31518 * 119.99896 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 120.00183 * 359.97438 * 13 11 9 16 16 H 1.48499 * 109.46828 * 89.99912 * 15 13 11 17 17 H 1.48492 * 109.47177 * 210.00055 * 15 13 11 18 18 H 1.48499 * 109.46785 * 330.00211 * 15 13 11 19 19 H 1.08998 * 109.47311 * 299.90144 * 1 2 3 20 20 H 1.08993 * 109.47584 * 59.90475 * 1 2 3 21 21 H 1.09000 * 109.47140 * 179.90533 * 1 2 3 22 22 H 1.09002 * 109.50560 * 304.94215 * 5 4 2 23 23 H 1.09003 * 109.49964 * 184.86323 * 5 4 2 24 24 H 1.09005 * 109.73742 * 67.37014 * 6 5 4 25 25 H 1.09001 * 109.73961 * 188.02575 * 6 5 4 26 26 H 0.97000 * 120.00007 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0274 0.0000 4 8 2.0069 -0.6754 -1.1662 5 6 3.4261 -0.6430 -1.3297 6 6 4.0865 -1.4182 -0.1830 7 6 3.5441 -0.8775 1.1243 8 8 4.2821 -0.5787 2.0323 9 6 2.0420 -0.7248 1.2508 10 1 1.5770 -1.7079 1.3236 11 6 1.7144 0.0853 2.4784 12 1 1.1729 1.0149 2.3834 13 6 2.1058 -0.3603 3.7231 14 7 1.8203 0.3470 4.7945 15 14 3.0417 -1.9685 3.8878 16 1 4.5002 -1.7038 3.7979 17 1 2.7313 -2.5898 5.2003 18 1 2.6377 -2.8903 2.7958 19 1 -0.3634 0.5123 0.8908 20 1 -0.3634 0.5153 -0.8890 21 1 -0.3633 -1.0277 -0.0017 22 1 3.7706 0.3910 -1.3157 23 1 3.6934 -1.1028 -2.2812 24 1 3.8482 -2.4783 -0.2700 25 1 5.1671 -1.2797 -0.2194 26 1 2.0954 0.0334 5.6703 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259622530.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:22 Heat of formation + Delta-G solvation = -107.479151 kcal Electronic energy + Delta-G solvation = -11783.233172 eV Core-core repulsion = 9633.208993 eV Total energy + Delta-G solvation = -2150.024179 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.17638 -38.82087 -35.36127 -33.53704 -32.52854 -29.38953 -26.37099 -24.12917 -22.58437 -20.34916 -19.36723 -17.44833 -17.00638 -16.61068 -16.33773 -15.87344 -15.35340 -14.84527 -14.54217 -13.91961 -13.49492 -13.13346 -13.01992 -12.76352 -12.25512 -12.05516 -11.87814 -11.69971 -11.29664 -10.90104 -10.52376 -10.11952 -8.34605 -6.42727 0.97355 1.20837 1.40509 1.43907 2.32015 2.83324 2.96855 3.41385 3.93338 4.03034 4.18118 4.27776 4.29170 4.58068 4.80568 4.84511 4.87852 5.06070 5.09590 5.19234 5.38511 5.51067 6.07297 6.33061 6.60677 6.71506 7.27058 8.78247 Molecular weight = 184.09amu Principal moments of inertia in cm(-1) A = 0.045064 B = 0.020198 C = 0.015681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.185097 B = 1385.977172 C = 1785.115267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.114 3.886 3 H 0.049 0.951 4 O -0.387 6.387 5 C 0.070 3.930 6 C -0.201 4.201 7 C 0.318 3.682 8 O -0.472 6.472 9 C -0.064 4.064 10 H 0.069 0.931 11 C -0.515 4.515 12 H 0.050 0.950 13 C 0.033 3.967 14 N -0.941 5.941 15 Si 0.945 3.055 16 H -0.273 1.273 17 H -0.303 1.303 18 H -0.254 1.254 19 H 0.063 0.937 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.142 0.858 24 H 0.118 0.882 25 H 0.107 0.893 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 -4.721 -13.308 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.056 3.944 3 H 0.067 0.933 4 O -0.306 6.306 5 C -0.007 4.007 6 C -0.239 4.239 7 C 0.196 3.804 8 O -0.349 6.349 9 C -0.084 4.084 10 H 0.087 0.913 11 C -0.552 4.552 12 H 0.069 0.931 13 C -0.166 4.166 14 N -0.581 5.581 15 Si 0.775 3.225 16 H -0.200 1.200 17 H -0.232 1.232 18 H -0.178 1.178 19 H 0.081 0.919 20 H 0.096 0.904 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.160 0.840 24 H 0.136 0.864 25 H 0.125 0.875 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.256 -4.630 -12.801 13.799 hybrid contribution 0.642 -0.283 1.109 1.312 sum 2.897 -4.913 -11.693 13.010 Atomic orbital electron populations 1.21628 0.91505 1.03028 1.02335 1.21940 0.96508 0.93780 0.82158 0.93345 1.87833 1.22200 1.77016 1.43530 1.22757 0.79953 0.99704 0.98239 1.23123 1.03178 1.03648 0.93929 1.26376 0.93839 0.72012 0.88135 1.90239 1.62629 1.39433 1.42605 1.20625 0.91851 0.99334 0.96559 0.91297 1.20853 1.36529 1.07744 0.90048 0.93129 1.25744 0.94999 1.00256 0.95603 1.70000 1.48268 1.40766 0.99028 0.85856 0.79948 0.79818 0.76925 1.19995 1.23244 1.17825 0.91855 0.90432 0.91687 0.92655 0.84033 0.86364 0.87491 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.41 71.98 0.68 -3.63 15 2 C 0.11 4.29 2.67 30.72 0.08 4.37 15 3 H 0.05 1.90 8.12 -2.38 -0.02 1.88 15 4 O -0.39 -12.26 10.33 -148.98 -1.54 -13.80 15 5 C 0.07 1.77 6.85 72.10 0.49 2.26 15 6 C -0.20 -5.95 6.40 30.23 0.19 -5.76 15 7 C 0.32 13.90 5.29 29.62 0.16 14.05 15 8 O -0.47 -24.59 12.40 -1.44 -0.02 -24.61 15 9 C -0.06 -2.95 1.60 -11.91 -0.02 -2.96 15 10 H 0.07 3.15 7.25 -2.39 -0.02 3.14 15 11 C -0.51 -29.45 8.29 25.60 0.21 -29.23 15 12 H 0.05 3.11 7.50 -2.91 -0.02 3.09 15 13 C 0.03 1.99 5.15 84.65 0.44 2.42 15 14 N -0.94 -60.85 13.96 21.45 0.30 -60.55 15 15 Si 0.94 49.37 24.07 68.60 1.65 51.02 15 16 H -0.27 -14.76 6.17 99.48 0.61 -14.15 15 17 H -0.30 -15.58 7.11 99.48 0.71 -14.88 15 18 H -0.25 -11.98 6.54 99.48 0.65 -11.33 15 19 H 0.06 2.38 7.18 -2.39 -0.02 2.36 15 20 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 21 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.06 1.38 8.13 -2.39 -0.02 1.36 15 23 H 0.14 2.35 8.14 -2.39 -0.02 2.34 15 24 H 0.12 3.05 8.14 -2.38 -0.02 3.03 15 25 H 0.11 2.76 8.14 -2.39 -0.02 2.74 15 26 H 0.26 16.22 8.31 -92.71 -0.77 15.45 15 Total: -1.00 -70.84 213.44 3.63 -67.20 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: 1.01 Total: -0.80 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 2.23 Total: -18.47 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.30 Total: -60.55 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.56 Total: -38.41 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.65 Total: 51.02 kcal Total: -70.84 3.63 -67.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622530.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.277 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds