Wall clock time and date at job start Mon Mar 30 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.48861 * 2 1 4 4 C 1.53096 * 109.47993 * 239.97291 * 2 1 3 5 5 C 1.53172 * 109.16237 * 297.62551 * 4 2 1 6 6 C 1.53174 * 109.03844 * 303.01800 * 5 4 2 7 7 H 1.09001 * 109.52606 * 297.07957 * 6 5 4 8 8 C 1.50703 * 109.57426 * 176.91555 * 6 5 4 9 9 H 1.07998 * 119.99960 * 0.29197 * 8 6 5 10 10 C 1.37885 * 119.99580 * 180.28150 * 8 6 5 11 11 N 1.31509 * 120.00455 * 0.02562 * 10 8 6 12 12 Si 1.86807 * 119.99514 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46937 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46884 * 120.00318 * 12 10 8 15 15 H 1.48499 * 109.46831 * 240.00259 * 12 10 8 16 16 C 1.53093 * 109.16375 * 56.98496 * 6 5 4 17 17 O 1.42905 * 109.41141 * 302.39044 * 16 6 5 18 18 H 1.08997 * 109.46984 * 299.96929 * 1 2 3 19 19 H 1.09002 * 109.47400 * 59.97033 * 1 2 3 20 20 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47199 * 180.02562 * 3 2 1 22 22 H 1.09001 * 109.47620 * 300.02820 * 3 2 1 23 23 H 1.08998 * 109.47016 * 60.03053 * 3 2 1 24 24 H 1.08996 * 109.51862 * 57.53069 * 4 2 1 25 25 H 1.08993 * 109.51849 * 177.72115 * 4 2 1 26 26 H 1.09002 * 109.54386 * 183.15042 * 5 4 2 27 27 H 1.09006 * 109.62035 * 62.93555 * 5 4 2 28 28 H 0.96999 * 120.00185 * 180.02562 * 11 10 8 29 29 H 1.08996 * 109.48657 * 182.40855 * 16 6 5 30 30 H 1.09002 * 109.48315 * 62.36673 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 1.5758 -2.1813 -1.2122 6 6 2.0765 -2.8322 0.0807 7 1 3.1665 -2.8400 0.0863 8 6 1.5623 -4.2462 0.1661 9 1 0.9439 -4.6446 -0.6246 10 6 1.8815 -5.0313 1.2538 11 7 2.6342 -4.5461 2.2168 12 14 1.2447 -6.7843 1.3593 13 1 0.4267 -7.0869 0.1574 14 1 2.3922 -7.7246 1.4262 15 1 0.4095 -6.9350 2.5778 16 6 1.5645 -2.0286 1.2790 17 8 2.0066 -0.6743 1.1664 18 1 -0.3633 0.5133 0.8902 19 1 -0.3634 0.5143 -0.8897 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1305 1.4420 -0.0005 22 1 1.6769 1.9565 -0.8897 23 1 1.6777 1.9561 0.8902 24 1 1.6421 -0.2357 -2.1398 25 1 3.1297 -0.6874 -1.2709 26 1 1.9825 -2.7157 -2.0708 27 1 0.4868 -2.2193 -1.2417 28 1 2.8591 -5.0985 2.9817 29 1 1.9530 -2.4623 2.2004 30 1 0.4750 -2.0550 1.2957 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259674710.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:10 Heat of formation + Delta-G solvation = -87.249441 kcal Electronic energy + Delta-G solvation = -11939.487947 eV Core-core repulsion = 9926.174089 eV Total energy + Delta-G solvation = -2013.313858 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.61655 -35.81075 -34.44908 -33.16426 -29.16728 -28.30628 -26.45023 -24.48719 -22.28444 -19.82273 -18.50694 -16.97142 -16.75827 -16.18157 -15.59867 -15.00079 -14.56268 -14.13479 -13.70407 -13.26983 -13.15403 -12.90370 -12.86455 -12.66332 -12.46830 -12.27605 -11.88904 -11.73592 -11.58487 -10.99720 -10.74562 -10.46102 -9.93769 -8.15728 -6.30001 1.39395 1.40764 1.52937 2.39872 3.06686 3.23761 3.96163 4.06048 4.18719 4.32920 4.61946 4.65591 4.75045 4.80568 4.93754 4.94519 4.97778 5.06146 5.16093 5.18537 5.26935 5.46649 5.50254 5.59984 5.84553 5.95239 6.22312 6.68594 6.87043 7.39102 8.90833 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.073564 B = 0.011818 C = 0.011290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.529312 B = 2368.635585 C = 2479.447397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 C -0.129 4.129 4 C -0.135 4.135 5 C -0.108 4.108 6 C 0.015 3.985 7 H -0.009 1.009 8 C -0.535 4.535 9 H 0.058 0.942 10 C 0.010 3.990 11 N -0.921 5.921 12 Si 0.961 3.039 13 H -0.265 1.265 14 H -0.280 1.280 15 H -0.278 1.278 16 C 0.080 3.920 17 O -0.410 6.410 18 H 0.059 0.941 19 H 0.088 0.912 20 H 0.047 0.953 21 H 0.053 0.947 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.264 0.736 29 H 0.083 0.917 30 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 7.970 -5.073 10.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.054 3.946 3 C -0.186 4.186 4 C -0.172 4.172 5 C -0.145 4.145 6 C -0.004 4.004 7 H 0.009 0.991 8 C -0.573 4.573 9 H 0.076 0.924 10 C -0.189 4.189 11 N -0.561 5.561 12 Si 0.786 3.214 13 H -0.189 1.189 14 H -0.206 1.206 15 H -0.204 1.204 16 C 0.004 3.996 17 O -0.331 6.331 18 H 0.078 0.922 19 H 0.107 0.893 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.114 0.886 23 H 0.080 0.920 24 H 0.110 0.890 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.634 8.013 -4.780 10.013 hybrid contribution -0.136 -1.383 0.263 1.415 sum -3.770 6.630 -4.518 8.864 Atomic orbital electron populations 1.22372 0.95327 1.02085 1.03078 1.21762 0.93902 0.93468 0.85492 1.21744 1.01333 0.92241 1.03304 1.22168 1.00578 0.95876 0.98595 1.21611 1.00068 0.95093 0.97765 1.19201 0.94547 0.94071 0.92586 0.99111 1.21529 1.31939 0.98144 1.05699 0.92411 1.25872 0.94995 1.02649 0.95365 1.70007 1.37916 1.38020 1.10111 0.85464 0.78190 0.79503 0.78274 1.18868 1.20608 1.20354 1.22580 0.96188 0.79288 1.01565 1.87843 1.74769 1.26364 1.44093 0.92228 0.89326 0.93446 0.92738 0.88631 0.91993 0.88981 0.92921 0.93199 0.92412 0.92722 0.89951 0.95463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.35 7.94 71.98 0.57 -4.78 16 2 C 0.09 3.28 1.11 -10.76 -0.01 3.27 16 3 C -0.13 -3.52 8.85 71.98 0.64 -2.89 16 4 C -0.13 -4.73 4.92 30.68 0.15 -4.58 16 5 C -0.11 -4.57 4.94 30.71 0.15 -4.42 16 6 C 0.01 0.78 2.30 -11.45 -0.03 0.75 16 7 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 8 C -0.54 -30.12 8.57 25.60 0.22 -29.90 16 9 H 0.06 3.16 7.75 -2.91 -0.02 3.14 16 10 C 0.01 0.55 5.30 84.66 0.45 1.00 16 11 N -0.92 -54.58 11.35 21.45 0.24 -54.34 16 12 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 16 C 0.08 4.13 5.54 72.01 0.40 4.52 16 17 O -0.41 -18.99 10.24 -148.98 -1.53 -20.51 16 18 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 19 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 20 H 0.05 1.69 4.98 -2.39 -0.01 1.67 16 21 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 2.35 6.62 -2.38 -0.02 2.34 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.08 4.81 6.14 -2.39 -0.01 4.80 16 30 H 0.03 1.37 6.34 -2.39 -0.02 1.35 16 Total: -1.00 -62.72 235.33 4.38 -58.34 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.10 Total: 7.60 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: 2.54 Total: -37.02 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.24 Total: -54.34 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -1.53 Total: -20.51 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.72 4.38 -58.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674710.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.906 kcal (2) G-P(sol) polarization free energy of solvation -62.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds