Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46990 * 2 1 4 4 H 1.09000 * 109.49329 * 55.02105 * 3 2 1 5 5 C 1.53093 * 109.47794 * 175.05519 * 3 2 1 6 6 C 1.53180 * 109.16207 * 177.58907 * 5 3 2 7 7 C 1.53180 * 109.03380 * 303.01706 * 6 5 3 8 8 H 1.09001 * 109.52400 * 297.07495 * 7 6 5 9 9 C 1.50701 * 109.52341 * 176.88595 * 7 6 5 10 10 H 1.08005 * 119.99429 * 0.31224 * 9 7 6 11 11 C 1.37875 * 120.00232 * 180.31376 * 9 7 6 12 12 N 1.31512 * 119.99847 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00062 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46612 * 90.00097 * 13 11 9 15 15 H 1.48497 * 109.47310 * 209.99964 * 13 11 9 16 16 H 1.48498 * 109.47039 * 330.00419 * 13 11 9 17 17 C 1.53096 * 109.16300 * 56.98167 * 7 6 5 18 18 O 1.42905 * 109.47459 * 294.99227 * 3 2 1 19 19 H 1.08996 * 109.47442 * 300.00781 * 1 2 3 20 20 H 1.09007 * 109.46897 * 60.00709 * 1 2 3 21 21 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47442 * 239.99219 * 2 1 3 23 23 H 1.09002 * 109.46463 * 119.99174 * 2 1 3 24 24 H 1.09000 * 109.52171 * 297.49519 * 5 3 2 25 25 H 1.09001 * 109.52367 * 57.61837 * 5 3 2 26 26 H 1.08996 * 109.54290 * 62.88145 * 6 5 3 27 27 H 1.08996 * 109.54301 * 183.15160 * 6 5 3 28 28 H 0.97007 * 119.99948 * 179.97438 * 12 11 9 29 29 H 1.09005 * 109.47867 * 182.40583 * 17 7 6 30 30 H 1.09001 * 109.48124 * 62.37304 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6059 1.9818 0.8419 5 6 3.5658 1.4446 0.1244 6 6 4.0734 2.8885 0.0631 7 6 3.5958 3.5309 -1.2429 8 1 4.0295 2.9996 -2.0901 9 6 4.0242 4.9752 -1.2799 10 1 4.5858 5.3931 -0.4574 11 6 3.6993 5.7632 -2.3636 12 7 3.0150 5.2545 -3.3648 13 14 4.2297 7.5538 -2.4091 14 1 5.5658 7.6580 -3.0488 15 1 3.2438 8.3425 -3.1907 16 1 4.3014 8.0841 -1.0239 17 6 2.0687 3.4483 -1.3145 18 8 1.6621 2.0815 -1.2211 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8932 -0.5137 0.8901 24 1 3.8543 0.9971 1.0755 25 1 3.9989 0.8701 -0.6945 26 1 3.6799 3.4496 0.9106 27 1 5.1629 2.8937 0.0948 28 1 2.7860 5.8090 -4.1272 29 1 1.7262 3.8656 -2.2615 30 1 1.6350 4.0138 -0.4898 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259705776.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -76.805326 kcal Electronic energy + Delta-G solvation = -11675.271850 eV Core-core repulsion = 9662.410883 eV Total energy + Delta-G solvation = -2012.860968 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.47037 -34.07320 -32.91173 -31.80787 -28.88182 -25.12815 -24.09745 -22.09543 -20.62050 -19.07032 -16.46384 -15.45008 -14.99182 -14.36254 -13.70250 -13.40166 -13.12468 -12.68462 -12.52593 -11.90938 -11.55978 -11.34637 -10.97963 -10.74844 -10.62175 -10.36897 -10.21233 -10.11331 -9.76332 -9.10449 -8.93026 -8.44718 -8.13207 -6.04105 -4.09684 3.28899 3.35661 3.38807 4.39828 4.79846 5.23302 5.28273 5.45307 5.63678 5.79969 5.90921 5.97359 6.11198 6.18707 6.39045 6.47201 6.50440 6.62237 6.68696 6.77726 6.92447 7.02770 7.27960 7.67394 7.84337 7.98605 8.22994 8.57087 8.95065 9.55129 11.03089 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.076155 B = 0.010614 C = 0.009778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.582701 B = 2637.424597 C = 2862.900721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.091 3.909 4 H 0.044 0.956 5 C -0.148 4.148 6 C -0.112 4.112 7 C 0.018 3.982 8 H 0.033 0.967 9 C -0.516 4.516 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.066 3.934 18 O -0.394 6.394 19 H 0.048 0.952 20 H 0.063 0.937 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.263 0.737 29 H 0.120 0.880 30 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 -6.493 5.670 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.062 0.938 5 C -0.185 4.185 6 C -0.150 4.150 7 C -0.001 4.001 8 H 0.051 0.949 9 C -0.554 4.554 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.010 4.010 18 O -0.314 6.314 19 H 0.067 0.933 20 H 0.082 0.918 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.137 0.863 30 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -2.407 -6.526 5.348 8.774 hybrid contribution 0.507 1.219 0.143 1.328 sum -1.900 -5.308 5.491 7.870 Atomic orbital electron populations 1.21698 0.95856 1.00601 1.02290 1.21537 0.96215 0.95753 1.01768 1.21916 0.93479 0.92823 0.88485 0.93845 1.22230 0.96639 0.99019 1.00658 1.21672 0.99555 0.93432 1.00304 1.19252 0.92770 0.95712 0.92372 0.94869 1.21153 1.35043 0.95066 1.04136 0.92491 1.25032 0.95021 0.98648 0.95444 1.69846 1.38943 1.36169 1.08049 0.86557 0.78408 0.84783 0.78062 1.20627 1.21140 1.19919 1.23044 0.97190 0.78320 1.02430 1.87842 1.78918 1.27725 1.36895 0.93310 0.91778 0.93502 0.91527 0.91675 0.92933 0.91948 0.93421 0.93168 0.92751 0.86254 0.96085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.81 37.16 0.36 -1.70 16 2 C -0.12 -1.75 5.64 -26.73 -0.15 -1.90 16 3 C 0.09 1.72 2.64 -26.68 -0.07 1.65 16 4 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.15 -2.75 5.42 -26.59 -0.14 -2.89 16 6 C -0.11 -2.43 5.25 -26.54 -0.14 -2.57 16 7 C 0.02 0.46 2.30 -91.63 -0.21 0.24 16 8 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 9 C -0.52 -14.36 8.57 -34.44 -0.30 -14.66 16 10 H 0.06 1.56 7.75 -52.48 -0.41 1.15 16 11 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 12 N -0.89 -25.68 11.35 55.43 0.63 -25.06 16 13 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.07 1.66 5.87 37.21 0.22 1.88 16 18 O -0.39 -9.00 9.94 -35.23 -0.35 -9.35 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.06 1.00 7.82 -51.92 -0.41 0.59 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.12 3.32 6.15 -51.93 -0.32 3.00 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 242.54 15.07 3.66 3.66 Total: -1.00 -28.57 242.54 -6.53 -35.10 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.92 Total: -2.26 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -0.52 Total: -18.38 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.63 Total: -25.06 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.35 Total: -9.35 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.57 -6.53 -35.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259705776.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.710 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds