Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46990 * 2 1 4 4 H 1.09000 * 109.49329 * 55.02105 * 3 2 1 5 5 C 1.53093 * 109.47794 * 175.05519 * 3 2 1 6 6 C 1.53180 * 109.16207 * 177.58907 * 5 3 2 7 7 C 1.53180 * 109.03380 * 303.01706 * 6 5 3 8 8 H 1.09001 * 109.52400 * 297.07495 * 7 6 5 9 9 C 1.50701 * 109.52341 * 176.88595 * 7 6 5 10 10 H 1.08005 * 119.99429 * 0.31224 * 9 7 6 11 11 C 1.37875 * 120.00232 * 180.31376 * 9 7 6 12 12 N 1.31512 * 119.99847 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00062 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46612 * 90.00097 * 13 11 9 15 15 H 1.48497 * 109.47310 * 209.99964 * 13 11 9 16 16 H 1.48498 * 109.47039 * 330.00419 * 13 11 9 17 17 C 1.53096 * 109.16300 * 56.98167 * 7 6 5 18 18 O 1.42905 * 109.47459 * 294.99227 * 3 2 1 19 19 H 1.08996 * 109.47442 * 300.00781 * 1 2 3 20 20 H 1.09007 * 109.46897 * 60.00709 * 1 2 3 21 21 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47442 * 239.99219 * 2 1 3 23 23 H 1.09002 * 109.46463 * 119.99174 * 2 1 3 24 24 H 1.09000 * 109.52171 * 297.49519 * 5 3 2 25 25 H 1.09001 * 109.52367 * 57.61837 * 5 3 2 26 26 H 1.08996 * 109.54290 * 62.88145 * 6 5 3 27 27 H 1.08996 * 109.54301 * 183.15160 * 6 5 3 28 28 H 0.97007 * 119.99948 * 179.97438 * 12 11 9 29 29 H 1.09005 * 109.47867 * 182.40583 * 17 7 6 30 30 H 1.09001 * 109.48124 * 62.37304 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6059 1.9818 0.8419 5 6 3.5658 1.4446 0.1244 6 6 4.0734 2.8885 0.0631 7 6 3.5958 3.5309 -1.2429 8 1 4.0295 2.9996 -2.0901 9 6 4.0242 4.9752 -1.2799 10 1 4.5858 5.3931 -0.4574 11 6 3.6993 5.7632 -2.3636 12 7 3.0150 5.2545 -3.3648 13 14 4.2297 7.5538 -2.4091 14 1 5.5658 7.6580 -3.0488 15 1 3.2438 8.3425 -3.1907 16 1 4.3014 8.0841 -1.0239 17 6 2.0687 3.4483 -1.3145 18 8 1.6621 2.0815 -1.2211 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8932 -0.5137 0.8901 24 1 3.8543 0.9971 1.0755 25 1 3.9989 0.8701 -0.6945 26 1 3.6799 3.4496 0.9106 27 1 5.1629 2.8937 0.0948 28 1 2.7860 5.8090 -4.1272 29 1 1.7262 3.8656 -2.2615 30 1 1.6350 4.0138 -0.4898 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259705776.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -93.783856 kcal Electronic energy + Delta-G solvation = -11676.008095 eV Core-core repulsion = 9662.410883 eV Total energy + Delta-G solvation = -2013.597212 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.19302 -35.90601 -34.50195 -33.65316 -30.58096 -27.01637 -25.87294 -23.79299 -22.03538 -20.87748 -18.55231 -17.11334 -16.88908 -16.12842 -15.35744 -15.08990 -14.52107 -14.42408 -14.14746 -13.63670 -13.24388 -12.91630 -12.73166 -12.43237 -12.22275 -12.06643 -11.86371 -11.69616 -11.49341 -11.00381 -10.84413 -10.52402 -9.99178 -8.16269 -6.30767 1.40608 1.41018 1.52078 2.39772 3.06149 3.23852 3.87628 4.12944 4.23585 4.34105 4.51197 4.57716 4.61833 4.73930 4.82266 5.01517 5.07473 5.11263 5.19017 5.22322 5.31528 5.37650 5.48337 5.56439 5.81353 5.93124 6.20010 6.64457 6.84745 7.38293 8.90063 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.076155 B = 0.010614 C = 0.009778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.582701 B = 2637.424597 C = 2862.900721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C 0.079 3.921 4 H 0.049 0.951 5 C -0.141 4.141 6 C -0.108 4.108 7 C 0.014 3.986 8 H -0.005 1.005 9 C -0.539 4.539 10 H 0.058 0.942 11 C 0.010 3.990 12 N -0.920 5.920 13 Si 0.962 3.038 14 H -0.275 1.275 15 H -0.281 1.281 16 H -0.266 1.266 17 C 0.080 3.920 18 O -0.408 6.408 19 H 0.056 0.944 20 H 0.038 0.962 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.264 0.736 29 H 0.087 0.913 30 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -6.996 7.182 10.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C 0.022 3.978 4 H 0.067 0.933 5 C -0.179 4.179 6 C -0.146 4.146 7 C -0.005 4.005 8 H 0.013 0.987 9 C -0.577 4.577 10 H 0.076 0.924 11 C -0.189 4.189 12 N -0.559 5.559 13 Si 0.787 3.213 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.190 1.190 17 C 0.004 3.996 18 O -0.328 6.328 19 H 0.075 0.925 20 H 0.057 0.943 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.117 0.883 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.229 -7.045 6.872 10.091 hybrid contribution 0.444 1.316 -0.317 1.424 sum -1.785 -5.729 6.555 8.887 Atomic orbital electron populations 1.21690 0.95079 1.02103 1.01460 1.21568 0.96918 0.93078 1.03184 1.22321 0.93937 0.94777 0.86810 0.93320 1.22199 0.96260 0.96844 1.02588 1.21588 0.99819 0.95356 0.97836 1.19217 0.93032 0.94982 0.93289 0.98680 1.21510 1.35399 0.96315 1.04450 0.92405 1.25878 0.94904 1.03083 0.95012 1.69997 1.39642 1.37746 1.08545 0.85497 0.78069 0.79376 0.78396 1.20025 1.20673 1.19019 1.22602 0.96653 0.79772 1.00571 1.87810 1.79139 1.26382 1.39502 0.92524 0.94257 0.90864 0.92021 0.88259 0.88924 0.92519 0.92999 0.92814 0.92671 0.89530 0.96309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.81 71.98 0.71 -3.03 16 2 C -0.11 -3.03 5.64 30.60 0.17 -2.86 16 3 C 0.08 2.83 2.64 30.63 0.08 2.92 16 4 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.14 -4.95 5.42 30.69 0.17 -4.79 16 6 C -0.11 -4.61 5.25 30.71 0.16 -4.45 16 7 C 0.01 0.71 2.30 -11.45 -0.03 0.69 16 8 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 9 C -0.54 -30.39 8.57 25.60 0.22 -30.17 16 10 H 0.06 3.17 7.75 -2.91 -0.02 3.14 16 11 C 0.01 0.56 5.30 84.65 0.45 1.01 16 12 N -0.92 -54.34 11.35 21.45 0.24 -54.10 16 13 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 C 0.08 4.16 5.87 72.01 0.42 4.58 16 18 O -0.41 -18.79 9.94 -148.98 -1.48 -20.27 16 19 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.04 1.18 7.82 -2.38 -0.02 1.16 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 29 H 0.09 5.03 6.15 -2.38 -0.01 5.02 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -62.04 242.54 4.22 -57.82 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.08 Total: 6.77 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 2.35 Total: -36.09 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.24 Total: -54.10 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -1.48 Total: -20.27 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -62.04 4.22 -57.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259705776.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.967 kcal (2) G-P(sol) polarization free energy of solvation -62.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds