Wall clock time and date at job start Mon Mar 30 2020 02:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 H 1.09000 * 109.47783 * 305.02402 * 3 2 1 5 5 C 1.53090 * 109.48183 * 184.99874 * 3 2 1 6 6 C 1.53177 * 109.16384 * 182.40918 * 5 3 2 7 7 C 1.53168 * 109.03839 * 56.97759 * 6 5 3 8 8 H 1.08999 * 109.52616 * 62.92416 * 7 6 5 9 9 C 1.50704 * 109.52367 * 183.05209 * 7 6 5 10 10 H 1.08005 * 119.99622 * 5.43103 * 9 7 6 11 11 C 1.37878 * 120.00248 * 185.42756 * 9 7 6 12 12 N 1.31518 * 119.99703 * 9.55819 * 11 9 7 13 13 Si 1.86795 * 120.00250 * 189.55369 * 11 9 7 14 14 H 1.48499 * 109.47099 * 94.99009 * 13 11 9 15 15 H 1.48497 * 109.47400 * 214.99376 * 13 11 9 16 16 H 1.48506 * 109.47074 * 334.99440 * 13 11 9 17 17 C 1.53096 * 109.16570 * 303.02076 * 7 6 5 18 18 O 1.42902 * 109.48080 * 65.05017 * 3 2 1 19 19 H 1.08997 * 109.47006 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47497 * 300.00608 * 1 2 3 21 21 H 1.08996 * 109.46570 * 60.00147 * 1 2 3 22 22 H 1.08993 * 109.47111 * 239.99443 * 2 1 3 23 23 H 1.09005 * 109.46567 * 119.99607 * 2 1 3 24 24 H 1.09007 * 109.51873 * 302.31202 * 5 3 2 25 25 H 1.08996 * 109.52218 * 62.49893 * 5 3 2 26 26 H 1.08995 * 109.54207 * 176.84909 * 6 5 3 27 27 H 1.09006 * 109.53803 * 297.01828 * 6 5 3 28 28 H 0.96998 * 119.99772 * 179.97438 * 12 11 9 29 29 H 1.08996 * 109.48247 * 177.59135 * 17 7 6 30 30 H 1.09007 * 109.47791 * 297.62565 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9817 -0.8415 5 6 3.5658 1.4445 -0.1258 6 6 4.0734 2.8884 -0.0645 7 6 3.5969 3.5305 1.2420 8 1 4.0313 2.9991 2.0887 9 6 4.0268 4.9745 1.2795 10 1 4.5066 5.4176 0.4193 11 6 3.8076 5.7298 2.4120 12 7 3.3988 5.1507 3.5197 13 14 4.0912 7.5757 2.3729 14 1 2.8076 8.2679 2.0924 15 1 4.6183 8.0236 3.6869 16 1 5.0731 7.9032 1.3079 17 6 2.0700 3.4479 1.3149 18 8 1.6632 2.0812 1.2215 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.9995 0.8708 0.6934 25 1 3.8535 0.9973 -1.0772 26 1 5.1629 2.8936 -0.0972 27 1 3.6805 3.4493 -0.9126 28 1 3.2450 5.6820 4.3165 29 1 1.7282 3.8650 2.2622 30 1 1.6356 4.0137 0.4906 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259705777.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:16 Heat of formation + Delta-G solvation = -94.912183 kcal Electronic energy + Delta-G solvation = -11659.311570 eV Core-core repulsion = 9645.665430 eV Total energy + Delta-G solvation = -2013.646140 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.21143 -35.87657 -34.52964 -33.65414 -30.63182 -26.99306 -25.89684 -23.81337 -22.04668 -20.88347 -18.54805 -17.13825 -16.87836 -16.16033 -15.37654 -15.08748 -14.54585 -14.41517 -14.14443 -13.67063 -13.23343 -12.89595 -12.81928 -12.42526 -12.20810 -12.07342 -11.88656 -11.70784 -11.51755 -10.91772 -10.90114 -10.51495 -10.02156 -8.18849 -6.29294 1.39776 1.40953 1.51772 2.40000 3.04969 3.19520 3.87311 4.12387 4.23465 4.33347 4.50732 4.57269 4.61341 4.72713 4.80766 5.00821 5.04744 5.09897 5.15387 5.22815 5.30966 5.35450 5.48344 5.57229 5.80394 5.87432 6.18588 6.63463 6.85040 7.38500 8.90272 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.074252 B = 0.010540 C = 0.009846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.003881 B = 2655.961379 C = 2843.016419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.081 3.919 4 H 0.052 0.948 5 C -0.142 4.142 6 C -0.108 4.108 7 C 0.013 3.987 8 H -0.001 1.001 9 C -0.540 4.540 10 H 0.058 0.942 11 C 0.012 3.988 12 N -0.919 5.919 13 Si 0.957 3.043 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.265 1.265 17 C 0.087 3.913 18 O -0.408 6.408 19 H 0.072 0.928 20 H 0.038 0.962 21 H 0.057 0.943 22 H 0.100 0.900 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.264 0.736 29 H 0.067 0.933 30 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 -6.874 -7.724 10.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C 0.023 3.977 4 H 0.070 0.930 5 C -0.179 4.179 6 C -0.146 4.146 7 C -0.006 4.006 8 H 0.017 0.983 9 C -0.578 4.578 10 H 0.076 0.924 11 C -0.187 4.187 12 N -0.558 5.558 13 Si 0.782 3.218 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.190 1.190 17 C 0.010 3.990 18 O -0.328 6.328 19 H 0.091 0.909 20 H 0.058 0.942 21 H 0.076 0.924 22 H 0.118 0.882 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.137 -6.937 -7.400 10.617 hybrid contribution 0.366 1.341 0.356 1.435 sum -2.771 -5.596 -7.044 9.413 Atomic orbital electron populations 1.21691 0.95031 1.02114 1.01497 1.21572 0.96946 0.93080 1.03196 1.22322 0.93914 0.94775 0.86679 0.93002 1.22207 0.96273 0.96881 1.02573 1.21582 0.99803 0.95347 0.97829 1.19210 0.92725 0.95159 0.93516 0.98280 1.21475 1.39788 0.96583 0.99908 0.92415 1.25862 0.94832 1.03233 0.94762 1.70111 1.47245 1.37057 1.01387 0.85555 0.78605 0.80016 0.77612 1.19882 1.20876 1.18962 1.22481 0.96764 0.80201 0.99547 1.87797 1.79120 1.26179 1.39686 0.90913 0.94238 0.92431 0.88212 0.92091 0.92649 0.88868 0.92991 0.92808 0.92752 0.91451 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.81 71.98 0.71 -2.94 16 2 C -0.11 -2.99 5.64 30.59 0.17 -2.82 16 3 C 0.08 2.83 2.64 30.62 0.08 2.91 16 4 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 5 C -0.14 -4.93 5.42 30.68 0.17 -4.76 16 6 C -0.11 -4.57 5.25 30.71 0.16 -4.41 16 7 C 0.01 0.67 2.16 -11.45 -0.02 0.64 16 8 H 0.00 -0.06 8.09 -2.39 -0.02 -0.08 16 9 C -0.54 -30.39 8.48 25.60 0.22 -30.18 16 10 H 0.06 3.16 7.77 -2.91 -0.02 3.14 16 11 C 0.01 0.70 5.23 84.65 0.44 1.14 16 12 N -0.92 -54.81 12.20 21.45 0.26 -54.55 16 13 Si 0.96 43.87 29.55 68.60 2.03 45.90 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 17 C 0.09 4.38 5.94 72.01 0.43 4.81 16 18 O -0.41 -18.42 9.94 -148.98 -1.48 -19.90 16 19 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 20 H 0.04 1.16 7.82 -2.39 -0.02 1.14 16 21 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 29 H 0.07 3.82 7.00 -2.39 -0.02 3.81 16 30 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -62.48 244.00 4.24 -58.24 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.08 Total: 5.91 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 2.35 Total: -35.60 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.26 Total: -54.55 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.48 Total: -19.90 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -62.48 4.24 -58.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259705777.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.672 kcal (2) G-P(sol) polarization free energy of solvation -62.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds