Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47176 * 2 1 4 4 H 1.08996 * 109.47836 * 55.02558 * 3 2 1 5 5 C 1.53092 * 109.48917 * 175.04876 * 3 2 1 6 6 C 1.53184 * 109.16407 * 177.60031 * 5 3 2 7 7 C 1.53186 * 109.03508 * 303.02003 * 6 5 3 8 8 H 1.08995 * 109.57505 * 176.91608 * 7 6 5 9 9 C 1.50697 * 109.51932 * 297.07543 * 7 6 5 10 10 H 1.08002 * 120.00599 * 359.68739 * 9 7 6 11 11 C 1.37880 * 119.99675 * 179.68272 * 9 7 6 12 12 N 1.31517 * 120.00210 * 179.97438 * 11 9 7 13 13 Si 1.86800 * 120.00019 * 0.02562 * 11 9 7 14 14 H 1.48503 * 109.46845 * 269.99914 * 13 11 9 15 15 H 1.48503 * 109.47399 * 29.99403 * 13 11 9 16 16 H 1.48498 * 109.47295 * 150.00010 * 13 11 9 17 17 C 1.53090 * 109.15877 * 56.98052 * 7 6 5 18 18 O 1.42901 * 109.48285 * 294.99805 * 3 2 1 19 19 H 1.08998 * 109.47199 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47200 * 299.99979 * 1 2 3 21 21 H 1.09003 * 109.47154 * 60.00091 * 1 2 3 22 22 H 1.09004 * 109.47096 * 240.00246 * 2 1 3 23 23 H 1.08996 * 109.46913 * 120.00546 * 2 1 3 24 24 H 1.09000 * 109.52577 * 297.50409 * 5 3 2 25 25 H 1.08999 * 109.52666 * 57.63137 * 5 3 2 26 26 H 1.09001 * 109.54257 * 183.15536 * 6 5 3 27 27 H 1.09000 * 109.54300 * 62.88786 * 6 5 3 28 28 H 0.96998 * 119.99640 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.48453 * 62.37551 * 17 7 6 30 30 H 1.09001 * 109.47872 * 182.40153 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6058 1.9815 0.8420 5 6 3.5658 1.4447 0.1246 6 6 4.0732 2.8888 0.0635 7 6 3.5955 3.5314 -1.2425 8 1 3.9053 4.5760 -1.2701 9 6 4.1953 2.7970 -2.4138 10 1 4.8557 1.9592 -2.2452 11 6 3.9010 3.1947 -3.7007 12 7 4.4247 2.5542 -4.7230 13 14 2.7593 4.6442 -3.9923 14 1 1.3587 4.1599 -4.0868 15 1 2.8767 5.6018 -2.8634 16 1 3.1347 5.3231 -5.2585 17 6 2.0686 3.4485 -1.3141 18 8 1.6621 2.0816 -1.2210 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 3.8543 0.9972 1.0757 25 1 3.9990 0.8705 -0.6944 26 1 5.1627 2.8941 0.0953 27 1 3.6796 3.4497 0.9112 28 1 4.2179 2.8343 -5.6284 29 1 1.6347 4.0138 -0.4893 30 1 1.7259 3.8659 -2.2609 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259705778.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -61.575015 kcal Electronic energy + Delta-G solvation = -11972.965910 eV Core-core repulsion = 9960.765378 eV Total energy + Delta-G solvation = -2012.200532 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.72088 -34.03974 -32.96179 -31.77439 -29.33316 -25.12801 -24.35898 -22.39878 -20.69610 -18.91093 -16.63470 -15.54435 -15.38153 -14.33700 -13.82767 -13.47158 -13.22563 -13.02011 -12.36317 -12.29527 -11.64681 -11.26701 -11.14646 -10.88398 -10.64727 -10.47433 -10.03631 -9.85291 -9.66569 -9.21110 -8.99232 -8.55784 -8.24251 -5.99426 -3.95600 3.30820 3.35938 3.40313 4.45655 4.63097 5.25432 5.34460 5.47660 5.62864 5.79038 5.84144 5.95704 6.02768 6.18302 6.18905 6.26420 6.34269 6.40285 6.54249 6.58842 6.65720 6.87103 7.03628 7.16637 7.29187 7.81596 8.19931 8.60703 9.03203 9.63327 11.14515 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.045386 B = 0.015295 C = 0.014337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.781246 B = 1830.214699 C = 1952.466426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.095 3.905 4 H 0.040 0.960 5 C -0.140 4.140 6 C -0.100 4.100 7 C -0.026 4.026 8 H 0.034 0.966 9 C -0.493 4.493 10 H 0.074 0.926 11 C 0.070 3.930 12 N -0.902 5.902 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.268 1.268 16 H -0.295 1.295 17 C 0.063 3.937 18 O -0.363 6.363 19 H 0.047 0.953 20 H 0.046 0.954 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 -1.095 9.361 10.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.037 3.963 4 H 0.058 0.942 5 C -0.178 4.178 6 C -0.138 4.138 7 C -0.045 4.045 8 H 0.052 0.948 9 C -0.531 4.531 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.541 5.541 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.193 1.193 16 H -0.223 1.223 17 C -0.014 4.014 18 O -0.281 6.281 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.600 -1.202 9.018 10.683 hybrid contribution -0.468 0.949 -0.154 1.069 sum -6.069 -0.254 8.864 10.745 Atomic orbital electron populations 1.21705 0.96019 1.00732 1.01991 1.21519 0.95963 0.95553 1.02262 1.21927 0.94052 0.92983 0.87336 0.94235 1.22103 0.96098 0.98435 1.01166 1.21419 1.00249 0.95085 0.97016 1.19834 0.92114 0.97342 0.95197 0.94823 1.20841 1.28011 1.15715 0.88494 0.90768 1.24975 0.95642 0.96229 0.96215 1.69884 1.44851 1.40852 0.98544 0.87005 0.81495 0.83466 0.77207 1.20264 1.19279 1.22289 1.22917 0.97626 0.82181 0.98652 1.87884 1.77675 1.25008 1.37564 0.93387 0.93487 0.91894 0.90914 0.91519 0.93256 0.89938 0.92318 0.94538 0.92816 0.96194 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.81 37.16 0.36 -1.74 16 2 C -0.12 -1.84 5.64 -26.74 -0.15 -1.99 16 3 C 0.10 1.79 2.64 -26.69 -0.07 1.72 16 4 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.14 -2.69 5.15 -26.59 -0.14 -2.83 16 6 C -0.10 -2.03 5.48 -26.54 -0.15 -2.18 16 7 C -0.03 -0.62 2.20 -91.63 -0.20 -0.82 16 8 H 0.03 0.81 7.21 -51.93 -0.37 0.44 16 9 C -0.49 -14.00 8.16 -34.44 -0.28 -14.28 16 10 H 0.07 2.28 7.16 -52.49 -0.38 1.90 16 11 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 12 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 13 Si 0.88 22.25 24.40 -169.99 -4.15 18.11 16 14 H -0.28 -6.91 6.85 56.52 0.39 -6.53 16 15 H -0.27 -6.38 6.53 56.52 0.37 -6.02 16 16 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 17 C 0.06 1.44 5.75 37.20 0.21 1.66 16 18 O -0.36 -8.31 9.63 -35.23 -0.34 -8.65 16 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.06 1.01 7.82 -51.93 -0.41 0.60 16 22 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.80 6.89 -51.93 -0.36 1.44 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.74 3.24 -51.93 -0.17 1.57 16 LS Contribution 232.66 15.07 3.51 3.51 Total: -1.00 -30.61 232.66 -5.38 -35.99 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.67 Total: -3.03 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -0.50 Total: -18.51 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.77 Total: -27.41 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.34 Total: -8.65 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.15 Total: 18.11 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.61 -5.38 -35.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259705778.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.586 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds