Wall clock time and date at job start Mon Mar 30 2020 02:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47398 * 2 1 4 4 C 1.47052 * 125.41098 * 89.99501 * 3 2 1 5 5 C 1.54104 * 103.86281 * 180.02562 * 4 3 2 6 6 N 1.47049 * 103.99081 * 359.92653 * 5 4 3 7 7 C 1.37191 * 125.40926 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99753 * 174.20800 * 7 6 5 9 9 C 1.38872 * 120.00349 * 354.20726 * 7 6 5 10 10 N 1.31476 * 119.99731 * 6.94466 * 9 7 6 11 11 Si 1.86800 * 120.00393 * 186.94320 * 9 7 6 12 12 H 1.48491 * 109.47190 * 90.00232 * 11 9 7 13 13 H 1.48506 * 109.47089 * 210.00386 * 11 9 7 14 14 H 1.48498 * 109.46786 * 329.99766 * 11 9 7 15 15 C 1.33950 * 125.40911 * 270.00199 * 3 2 1 16 16 O 1.21579 * 123.04342 * 359.97438 * 15 3 2 17 17 H 1.09010 * 109.47144 * 60.00005 * 1 2 3 18 18 H 1.08999 * 109.47474 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47420 * 300.00651 * 1 2 3 20 20 H 1.09002 * 109.47398 * 239.99821 * 2 1 3 21 21 H 1.08995 * 109.46730 * 119.99933 * 2 1 3 22 22 H 1.09004 * 110.54467 * 61.40985 * 4 3 2 23 23 H 1.08992 * 110.67354 * 298.65856 * 4 3 2 24 24 H 1.08996 * 110.54743 * 118.60127 * 5 4 3 25 25 H 1.09007 * 110.54545 * 241.26263 * 5 4 3 26 26 H 0.97008 * 120.00035 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3023 2.1845 1.1985 5 6 2.7796 3.5361 0.6325 6 7 2.7167 3.3532 -0.8252 7 6 3.0519 4.2995 -1.7603 8 1 3.0624 4.0422 -2.8092 9 6 3.3778 5.5881 -1.3582 10 7 3.4986 5.8668 -0.0790 11 14 3.6447 6.9256 -2.6347 12 1 2.3551 7.6061 -2.9155 13 1 4.6243 7.9148 -2.1178 14 1 4.1670 6.3189 -3.8854 15 6 2.2771 2.1129 -1.0917 16 8 2.1286 1.6918 -2.2226 17 1 -0.3634 0.5139 -0.8901 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 1.8934 -0.5139 -0.8900 21 1 1.8932 -0.5138 0.8900 22 1 3.0884 1.7194 1.7934 23 1 1.4001 2.3173 1.7954 24 1 2.1130 4.3392 0.9466 25 1 3.8021 3.7435 0.9483 26 1 3.7267 6.7669 0.2019 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259764611.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:57 Heat of formation + Delta-G solvation = -29.961080 kcal Electronic energy + Delta-G solvation = -11509.071621 eV Core-core repulsion = 9394.701629 eV Total energy + Delta-G solvation = -2114.369992 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.60874 -37.02895 -36.50291 -34.00666 -31.57945 -29.29261 -27.13046 -24.35828 -23.34637 -20.76372 -19.36378 -17.38384 -17.23307 -16.89361 -16.12879 -15.33505 -14.89173 -14.40794 -14.31482 -14.04567 -13.47360 -13.07773 -12.95719 -12.60310 -12.53227 -12.25215 -12.10902 -11.88887 -11.07015 -10.84512 -10.00215 -9.35559 -8.32464 -5.86376 1.41119 1.42296 1.54201 2.00309 2.33132 2.42333 3.18576 3.60775 3.92634 4.06262 4.29101 4.53574 4.58037 4.62527 4.75752 4.94508 5.15804 5.26424 5.35078 5.40146 5.54927 6.05940 6.29759 6.69034 7.23571 7.46520 8.20174 8.76257 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.072061 B = 0.012563 C = 0.011215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.467371 B = 2228.175463 C = 2496.013789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 N -0.644 5.644 4 C 0.095 3.905 5 C 0.134 3.866 6 N -0.494 5.494 7 C -0.321 4.321 8 H 0.075 0.925 9 C -0.009 4.009 10 N -0.910 5.910 11 Si 0.999 3.001 12 H -0.272 1.272 13 H -0.268 1.268 14 H -0.274 1.274 15 C 0.635 3.365 16 O -0.674 6.674 17 H 0.022 0.978 18 H 0.093 0.907 19 H 0.065 0.935 20 H 0.057 0.943 21 H 0.113 0.887 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -5.368 6.728 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 N -0.383 5.383 4 C -0.028 4.028 5 C 0.011 3.989 6 N -0.218 5.218 7 C -0.448 4.448 8 H 0.093 0.907 9 C -0.209 4.209 10 N -0.550 5.550 11 Si 0.822 3.178 12 H -0.198 1.198 13 H -0.193 1.193 14 H -0.199 1.199 15 C 0.338 3.662 16 O -0.561 6.561 17 H 0.041 0.959 18 H 0.112 0.888 19 H 0.084 0.916 20 H 0.075 0.925 21 H 0.131 0.869 22 H 0.116 0.884 23 H 0.112 0.888 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.625 -5.419 6.227 8.662 hybrid contribution 0.189 0.833 -0.693 1.100 sum -2.436 -4.586 5.534 7.589 Atomic orbital electron populations 1.22130 0.95569 1.03071 1.01105 1.21274 0.94530 0.78649 1.03172 1.47218 1.71227 1.14508 1.05392 1.22680 1.02054 0.89924 0.88133 1.22045 1.01674 0.95304 0.79920 1.43090 1.61263 1.10501 1.06976 1.19413 1.46485 0.90143 0.88746 0.90702 1.25994 0.96379 0.99158 0.99346 1.69989 1.48221 1.21887 1.14926 0.84853 0.78321 0.77152 0.77482 1.19760 1.19295 1.19866 1.16354 0.82278 0.82803 0.84801 1.90645 1.66030 1.75889 1.23557 0.95873 0.88809 0.91631 0.92478 0.86903 0.88426 0.88757 0.91642 0.91884 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 10.24 71.98 0.74 -3.63 15 2 C 0.14 4.48 6.72 86.38 0.58 5.06 15 3 N -0.64 -26.29 2.96 -838.09 -2.48 -28.77 15 4 C 0.10 3.26 7.68 86.65 0.67 3.93 15 5 C 0.13 6.18 5.65 86.65 0.49 6.67 15 6 N -0.49 -27.83 3.08 -650.59 -2.01 -29.83 15 7 C -0.32 -19.27 9.93 84.01 0.83 -18.43 15 8 H 0.08 4.75 7.69 -2.91 -0.02 4.73 15 9 C -0.01 -0.50 5.48 84.90 0.47 -0.03 15 10 N -0.91 -49.03 10.39 21.65 0.23 -48.80 15 11 Si 1.00 43.72 29.56 68.60 2.03 45.75 15 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 13 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 15 C 0.64 34.64 8.25 179.47 1.48 36.12 15 16 O -0.67 -41.92 17.03 -3.96 -0.07 -41.98 15 17 H 0.02 0.78 8.14 -2.38 -0.02 0.76 15 18 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 19 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 20 H 0.06 1.97 7.91 -2.39 -0.02 1.95 15 21 H 0.11 2.47 8.14 -2.39 -0.02 2.45 15 22 H 0.10 2.69 8.14 -2.38 -0.02 2.68 15 23 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 24 H 0.07 3.15 7.38 -2.39 -0.02 3.13 15 25 H 0.06 3.01 7.63 -2.38 -0.02 2.99 15 26 H 0.27 13.72 8.31 -92.70 -0.77 12.95 15 Total: -1.00 -72.86 226.06 4.11 -68.75 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.16 Total: 5.22 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: 5.25 Total: 29.68 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -4.26 Total: -107.41 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -0.07 Total: -41.98 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -72.86 4.11 -68.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764611.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.784 kcal (2) G-P(sol) polarization free energy of solvation -72.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds