Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 119.99958 * 2 1 4 4 H 1.07993 * 120.00214 * 327.83014 * 3 2 1 5 5 C 1.38818 * 119.99513 * 147.83238 * 3 2 1 6 6 N 1.31611 * 120.00286 * 332.50057 * 5 3 2 7 7 Si 1.86797 * 119.99585 * 152.50598 * 5 3 2 8 8 H 1.48505 * 109.47364 * 59.99937 * 7 5 3 9 9 H 1.48502 * 109.47558 * 299.99790 * 7 5 3 10 10 H 1.48503 * 109.47038 * 179.97438 * 7 5 3 11 11 C 1.46498 * 119.99815 * 180.02562 * 2 1 3 12 12 H 1.09008 * 109.85644 * 195.96902 * 11 2 1 13 13 N 1.47895 * 109.86915 * 317.08153 * 11 2 1 14 14 C 1.48624 * 105.34854 * 94.59590 * 13 11 2 15 15 C 1.54922 * 102.81715 * 38.33454 * 14 13 11 16 16 C 1.51557 * 109.86510 * 74.99848 * 11 2 1 17 17 O 1.20762 * 127.09156 * 61.44299 * 16 11 2 18 18 H 1.08995 * 109.47376 * 94.41272 * 1 2 3 19 19 H 1.09003 * 109.47083 * 214.41318 * 1 2 3 20 20 H 1.08999 * 109.46773 * 334.40801 * 1 2 3 21 21 H 0.97005 * 120.00398 * 354.62018 * 6 5 3 22 22 H 1.00903 * 111.00343 * 214.82439 * 13 11 2 23 23 H 1.09000 * 110.73953 * 280.00547 * 14 13 11 24 24 H 1.08992 * 110.74469 * 156.66811 * 14 13 11 25 25 H 1.08992 * 110.68305 * 204.48231 * 15 14 13 26 26 H 1.09000 * 110.82003 * 81.38220 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7341 2.0494 -0.4979 5 6 3.3780 1.2781 0.6401 6 7 3.6504 0.4897 1.6581 7 14 4.6442 2.5213 0.0565 8 1 4.0798 3.8907 0.1644 9 1 4.9972 2.2415 -1.3585 10 1 5.8622 2.4206 0.9002 11 6 2.1974 -1.2687 -0.0006 12 1 3.2362 -1.0967 0.2816 13 7 1.5666 -2.2137 0.9462 14 6 0.6351 -3.0303 0.1249 15 6 1.4246 -3.2315 -1.1927 16 6 2.1354 -1.8986 -1.3777 17 8 2.5618 -1.4377 -2.4092 18 1 -0.3634 -0.0791 -1.0246 19 1 -0.3633 -0.8478 0.5808 20 1 -0.3633 0.9268 0.4439 21 1 2.9665 -0.1007 2.0110 22 1 2.2599 -2.7954 1.3925 23 1 -0.2927 -2.4887 -0.0598 24 1 0.4351 -3.9880 0.6053 25 1 0.7453 -3.4238 -2.0230 26 1 2.1465 -4.0419 -1.0919 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259874689.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = 2.647865 kcal Electronic energy + Delta-G solvation = -11754.586658 eV Core-core repulsion = 9641.630696 eV Total energy + Delta-G solvation = -2112.955962 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.32422 -36.47896 -34.44449 -31.04119 -28.81436 -26.96066 -25.22668 -22.42787 -21.03824 -18.76030 -17.49486 -16.22917 -15.62415 -14.27864 -13.99238 -13.83296 -13.54151 -13.21627 -12.76752 -12.43101 -12.00909 -11.46142 -11.07548 -10.97118 -10.63139 -10.55236 -10.02481 -9.53322 -9.18383 -8.47085 -8.11186 -6.87515 -6.13010 -3.35779 2.55303 3.50589 3.57161 3.73296 4.51458 4.65849 4.71792 5.19398 5.24778 5.33014 5.41630 5.61583 5.83790 6.03175 6.15872 6.45852 6.57085 6.61468 6.82612 7.19799 7.76121 7.99336 8.20663 8.52806 9.04966 9.74044 10.17628 11.12250 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.050963 B = 0.015844 C = 0.014882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.288945 B = 1766.824051 C = 1880.968439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.564 5.564 3 C -0.351 4.351 4 H 0.060 0.940 5 C -0.020 4.020 6 N -0.902 5.902 7 Si 1.060 2.940 8 H -0.290 1.290 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.265 3.735 12 H 0.119 0.881 13 N -0.664 5.664 14 C 0.044 3.956 15 C -0.228 4.228 16 C 0.328 3.672 17 O -0.441 6.441 18 H -0.003 1.003 19 H 0.043 0.957 20 H 0.043 0.957 21 H 0.278 0.722 22 H 0.341 0.659 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 -7.067 -1.763 8.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.288 5.288 3 C -0.480 4.480 4 H 0.078 0.922 5 C -0.224 4.224 6 N -0.542 5.542 7 Si 0.889 3.111 8 H -0.217 1.217 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.066 3.934 12 H 0.136 0.864 13 N -0.295 5.295 14 C -0.085 4.085 15 C -0.268 4.268 16 C 0.196 3.804 17 O -0.311 6.311 18 H 0.015 0.985 19 H 0.062 0.938 20 H 0.062 0.938 21 H 0.089 0.911 22 H 0.158 0.842 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.651 -5.756 -1.765 6.578 hybrid contribution -1.134 -1.232 -0.801 1.856 sum -3.785 -6.988 -2.566 8.351 Atomic orbital electron populations 1.21212 0.84941 1.00051 0.96548 1.43588 1.00417 1.00352 1.84471 1.19918 1.05968 0.89438 1.32690 0.92236 1.25940 0.99875 1.02700 0.93842 1.70756 1.39020 1.25821 1.18583 0.83618 0.76382 0.75202 0.75948 1.21678 1.21745 1.20952 1.21981 0.98852 0.85230 0.87347 0.86432 1.62558 1.20564 1.18109 1.28277 1.23141 0.97279 0.97559 0.90559 1.23576 1.01968 0.99545 1.01677 1.26902 0.74059 0.86563 0.92848 1.90300 1.39455 1.67321 1.33986 0.98534 0.93820 0.93785 0.91088 0.84186 0.89683 0.90643 0.89601 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.63 9.84 59.85 0.59 3.22 15 2 N -0.56 -14.63 2.68 -177.20 -0.48 -15.10 15 3 C -0.35 -10.13 9.40 -15.06 -0.14 -10.27 15 4 H 0.06 1.74 7.96 -52.49 -0.42 1.32 15 5 C -0.02 -0.58 4.69 -17.43 -0.08 -0.67 15 6 N -0.90 -26.56 12.22 55.49 0.68 -25.89 15 7 Si 1.06 25.72 30.00 -169.99 -5.10 20.62 15 8 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 15 11 C 0.26 6.14 2.63 -126.84 -0.33 5.81 15 12 H 0.12 3.12 5.61 -51.92 -0.29 2.83 15 13 N -0.66 -12.45 6.67 -107.69 -0.72 -13.17 15 14 C 0.04 0.66 6.96 -1.85 -0.01 0.65 15 15 C -0.23 -3.57 6.95 -26.13 -0.18 -3.75 15 16 C 0.33 7.13 7.49 -27.88 -0.21 6.92 15 17 O -0.44 -11.11 17.99 6.00 0.11 -11.01 15 18 H 0.00 -0.07 8.14 -51.93 -0.42 -0.50 15 19 H 0.04 0.88 5.30 -51.93 -0.28 0.61 15 20 H 0.04 0.98 8.00 -51.93 -0.42 0.56 15 21 H 0.28 8.16 7.22 -40.82 -0.29 7.86 15 22 H 0.34 5.70 8.92 -39.29 -0.35 5.35 15 23 H 0.08 1.32 6.02 -51.93 -0.31 1.01 15 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 LS Contribution 220.44 15.07 3.32 3.32 Total: -1.00 -32.11 220.44 -5.40 -37.51 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -2.84 Total: 1.80 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.37 Total: 1.92 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.52 Total: -54.16 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.11 Total: -11.01 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.10 Total: 20.62 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -32.11 -5.40 -37.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874689.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.156 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds