Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 119.99958 * 2 1 4 4 H 1.07993 * 120.00214 * 327.83014 * 3 2 1 5 5 C 1.38818 * 119.99513 * 147.83238 * 3 2 1 6 6 N 1.31611 * 120.00286 * 332.50057 * 5 3 2 7 7 Si 1.86797 * 119.99585 * 152.50598 * 5 3 2 8 8 H 1.48505 * 109.47364 * 59.99937 * 7 5 3 9 9 H 1.48502 * 109.47558 * 299.99790 * 7 5 3 10 10 H 1.48503 * 109.47038 * 179.97438 * 7 5 3 11 11 C 1.46498 * 119.99815 * 180.02562 * 2 1 3 12 12 H 1.09008 * 109.85644 * 195.96902 * 11 2 1 13 13 N 1.47895 * 109.86915 * 317.08153 * 11 2 1 14 14 C 1.48624 * 105.34854 * 94.59590 * 13 11 2 15 15 C 1.54922 * 102.81715 * 38.33454 * 14 13 11 16 16 C 1.51557 * 109.86510 * 74.99848 * 11 2 1 17 17 O 1.20762 * 127.09156 * 61.44299 * 16 11 2 18 18 H 1.08995 * 109.47376 * 94.41272 * 1 2 3 19 19 H 1.09003 * 109.47083 * 214.41318 * 1 2 3 20 20 H 1.08999 * 109.46773 * 334.40801 * 1 2 3 21 21 H 0.97005 * 120.00398 * 354.62018 * 6 5 3 22 22 H 1.00903 * 111.00343 * 214.82439 * 13 11 2 23 23 H 1.09000 * 110.73953 * 280.00547 * 14 13 11 24 24 H 1.08992 * 110.74469 * 156.66811 * 14 13 11 25 25 H 1.08992 * 110.68305 * 204.48231 * 15 14 13 26 26 H 1.09000 * 110.82003 * 81.38220 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7341 2.0494 -0.4979 5 6 3.3780 1.2781 0.6401 6 7 3.6504 0.4897 1.6581 7 14 4.6442 2.5213 0.0565 8 1 4.0798 3.8907 0.1644 9 1 4.9972 2.2415 -1.3585 10 1 5.8622 2.4206 0.9002 11 6 2.1974 -1.2687 -0.0006 12 1 3.2362 -1.0967 0.2816 13 7 1.5666 -2.2137 0.9462 14 6 0.6351 -3.0303 0.1249 15 6 1.4246 -3.2315 -1.1927 16 6 2.1354 -1.8986 -1.3777 17 8 2.5618 -1.4377 -2.4092 18 1 -0.3634 -0.0791 -1.0246 19 1 -0.3633 -0.8478 0.5808 20 1 -0.3633 0.9268 0.4439 21 1 2.9665 -0.1007 2.0110 22 1 2.2599 -2.7954 1.3925 23 1 -0.2927 -2.4887 -0.0598 24 1 0.4351 -3.9880 0.6053 25 1 0.7453 -3.4238 -2.0230 26 1 2.1465 -4.0419 -1.0919 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259874689.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = -22.070268 kcal Electronic energy + Delta-G solvation = -11755.658517 eV Core-core repulsion = 9641.630696 eV Total energy + Delta-G solvation = -2114.027821 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.00171 -38.24507 -36.26274 -33.08417 -30.26586 -28.62522 -27.23335 -24.18275 -22.62826 -20.51177 -19.46387 -17.84660 -17.32917 -16.04659 -15.76010 -15.61311 -15.36700 -14.94652 -14.43295 -14.14957 -13.60216 -13.06022 -12.84424 -12.76980 -12.48630 -12.06721 -11.92952 -11.51146 -10.88157 -10.54052 -9.67699 -8.91327 -8.29616 -5.53879 0.84975 1.54224 1.62071 1.81339 2.58904 2.97206 3.18947 3.33874 3.59098 3.78292 4.14199 4.18039 4.53637 4.65384 4.73388 4.84540 4.89049 4.92912 5.14391 5.63051 5.83017 6.29057 6.44355 6.51740 7.01228 7.65958 8.09826 8.90745 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.050963 B = 0.015844 C = 0.014882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.288945 B = 1766.824051 C = 1880.968439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.587 5.587 3 C -0.370 4.370 4 H 0.044 0.956 5 C -0.063 4.063 6 N -0.920 5.920 7 Si 1.104 2.896 8 H -0.271 1.271 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.261 3.739 12 H 0.079 0.921 13 N -0.669 5.669 14 C 0.049 3.951 15 C -0.205 4.205 16 C 0.321 3.679 17 O -0.485 6.485 18 H 0.002 0.998 19 H 0.068 0.932 20 H 0.034 0.966 21 H 0.269 0.731 22 H 0.353 0.647 23 H 0.082 0.918 24 H 0.123 0.877 25 H 0.108 0.892 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -8.680 -1.843 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.313 5.313 3 C -0.500 4.500 4 H 0.062 0.938 5 C -0.262 4.262 6 N -0.560 5.560 7 Si 0.928 3.072 8 H -0.197 1.197 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.062 3.938 12 H 0.096 0.904 13 N -0.301 5.301 14 C -0.080 4.080 15 C -0.245 4.245 16 C 0.193 3.807 17 O -0.358 6.358 18 H 0.020 0.980 19 H 0.086 0.914 20 H 0.052 0.948 21 H 0.079 0.921 22 H 0.172 0.828 23 H 0.100 0.900 24 H 0.141 0.859 25 H 0.127 0.873 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.423 -7.403 -1.825 8.357 hybrid contribution -0.959 -0.807 -0.763 1.468 sum -4.382 -8.210 -2.588 9.659 Atomic orbital electron populations 1.21245 0.83373 1.00622 0.97148 1.43785 1.01674 1.00561 1.85230 1.20060 1.06822 0.90605 1.32511 0.93849 1.27105 1.01489 1.03988 0.93601 1.70834 1.38739 1.26790 1.19660 0.83014 0.74543 0.74356 0.75243 1.19676 1.21810 1.20698 1.21892 0.96915 0.85653 0.89346 0.90418 1.62393 1.21048 1.18790 1.27859 1.23312 0.95837 0.99000 0.89814 1.23510 1.02178 0.96006 1.02762 1.27318 0.73196 0.89054 0.91164 1.90277 1.41350 1.69182 1.34999 0.97958 0.91406 0.94754 0.92058 0.82842 0.90008 0.85924 0.87326 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.31 9.84 127.77 1.26 6.57 15 2 N -0.59 -30.66 2.68 -714.54 -1.92 -32.58 15 3 C -0.37 -21.82 9.40 84.03 0.79 -21.03 15 4 H 0.04 2.62 7.96 -2.91 -0.02 2.60 15 5 C -0.06 -3.65 4.69 84.86 0.40 -3.25 15 6 N -0.92 -55.09 12.22 21.65 0.26 -54.83 15 7 Si 1.10 52.71 30.00 68.60 2.06 54.77 15 8 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 15 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 15 11 C 0.26 12.03 2.63 128.56 0.34 12.37 15 12 H 0.08 4.23 5.61 -2.38 -0.01 4.22 15 13 N -0.67 -23.61 6.67 -494.61 -3.30 -26.91 15 14 C 0.05 1.25 6.96 86.63 0.60 1.86 15 15 C -0.21 -5.58 6.95 30.98 0.22 -5.36 15 16 C 0.32 13.58 7.49 29.85 0.22 13.81 15 17 O -0.49 -24.48 17.99 -1.46 -0.03 -24.51 15 18 H 0.00 0.10 8.14 -2.39 -0.02 0.08 15 19 H 0.07 2.61 5.30 -2.39 -0.01 2.60 15 20 H 0.03 1.53 8.00 -2.39 -0.02 1.51 15 21 H 0.27 16.11 7.22 -92.70 -0.67 15.44 15 22 H 0.35 11.00 8.92 -89.69 -0.80 10.20 15 23 H 0.08 2.19 6.02 -2.39 -0.01 2.17 15 24 H 0.12 2.10 8.14 -2.39 -0.02 2.09 15 25 H 0.11 2.59 8.14 -2.39 -0.02 2.57 15 26 H 0.13 2.76 8.14 -2.39 -0.02 2.74 15 Total: -1.00 -71.21 220.44 1.40 -69.82 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.49 Total: 9.29 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 3.83 Total: 4.95 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -4.95 Total: -114.31 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.03 Total: -24.51 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.06 Total: 54.77 kcal Total: -71.21 1.40 -69.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874689.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.746 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds