Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00416 * 2 1 4 4 H 1.08003 * 120.00080 * 158.64250 * 3 2 1 5 5 C 1.38817 * 119.99953 * 338.64657 * 3 2 1 6 6 N 1.31620 * 119.99858 * 348.61613 * 5 3 2 7 7 Si 1.86803 * 120.00006 * 168.61673 * 5 3 2 8 8 H 1.48503 * 109.47025 * 90.00040 * 7 5 3 9 9 H 1.48497 * 109.46776 * 209.99919 * 7 5 3 10 10 H 1.48493 * 109.47043 * 330.00144 * 7 5 3 11 11 C 1.46500 * 119.99910 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.86018 * 164.60621 * 11 2 1 13 13 N 1.47897 * 109.86659 * 43.63051 * 11 2 1 14 14 C 1.48954 * 105.18414 * 215.59919 * 13 11 2 15 15 C 1.54917 * 102.83380 * 38.35187 * 14 13 11 16 16 C 1.51555 * 109.86663 * 285.57700 * 11 2 1 17 17 O 1.20761 * 127.08658 * 300.52019 * 16 11 2 18 18 H 1.09000 * 109.47235 * 204.96955 * 1 2 3 19 19 H 1.09002 * 109.47031 * 324.97396 * 1 2 3 20 20 H 1.09005 * 109.47160 * 84.96832 * 1 2 3 21 21 H 0.96997 * 120.00159 * 179.97438 * 6 5 3 22 22 H 1.00901 * 110.99958 * 335.79091 * 13 11 2 23 23 H 1.08994 * 110.75886 * 280.00235 * 14 13 11 24 24 H 1.09001 * 110.86269 * 156.74769 * 14 13 11 25 25 H 1.09002 * 110.67525 * 204.44678 * 15 14 13 26 26 H 1.09005 * 110.82609 * 81.35663 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1741 1.2179 0.3406 5 6 1.5272 2.3468 -0.4377 6 7 0.3684 2.2784 -1.0582 7 14 2.3340 4.0062 -0.1462 8 1 3.2117 4.3389 -1.2969 9 1 1.2856 5.0484 -0.0057 10 1 3.1461 3.9503 1.0958 11 6 2.1974 -1.2687 -0.0006 12 1 3.2386 -1.0951 -0.2726 13 7 1.5768 -2.2070 -0.9607 14 6 1.7117 -3.5518 -0.3348 15 6 1.4589 -3.2600 1.1655 16 6 2.1235 -1.9068 1.3721 17 8 2.5115 -1.4377 2.4151 18 1 -0.3634 -0.9316 0.4338 19 1 -0.3633 0.8416 0.5898 20 1 -0.3634 0.0901 -1.0237 21 1 -0.0668 3.0896 -1.3638 22 1 0.6073 -1.9755 -1.1172 23 1 2.7149 -3.9499 -0.4869 24 1 0.9617 -4.2391 -0.7261 25 1 1.9295 -4.0194 1.7900 26 1 0.3906 -3.2001 1.3740 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259874698.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = -20.563015 kcal Electronic energy + Delta-G solvation = -11534.113785 eV Core-core repulsion = 9420.151323 eV Total energy + Delta-G solvation = -2113.962461 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.93295 -38.14092 -36.33054 -32.99679 -29.91081 -28.55383 -27.73147 -24.30474 -22.50512 -20.34528 -19.02698 -17.97820 -17.06721 -16.56542 -15.80950 -15.47720 -15.18561 -14.57330 -14.26596 -13.91284 -13.71931 -13.05405 -12.84586 -12.67395 -12.49121 -12.22516 -12.08368 -11.91689 -11.12408 -10.58485 -9.72793 -8.79706 -7.91691 -5.42705 0.88551 1.44420 1.45286 1.55746 2.45111 3.12730 3.14308 3.43222 3.52867 3.82810 4.07634 4.25137 4.55057 4.62723 4.84021 4.87490 5.06258 5.17429 5.47163 5.61748 5.73017 6.14511 6.35151 6.52147 7.04786 7.70068 8.10236 9.10666 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.062453 B = 0.013120 C = 0.011979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.230545 B = 2133.655458 C = 2336.779730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.601 5.601 3 C -0.276 4.276 4 H 0.064 0.936 5 C -0.043 4.043 6 N -0.930 5.930 7 Si 0.974 3.026 8 H -0.279 1.279 9 H -0.287 1.287 10 H -0.277 1.277 11 C 0.270 3.730 12 H 0.085 0.915 13 N -0.673 5.673 14 C 0.050 3.950 15 C -0.208 4.208 16 C 0.325 3.675 17 O -0.480 6.480 18 H 0.028 0.972 19 H 0.020 0.980 20 H 0.024 0.976 21 H 0.253 0.747 22 H 0.345 0.655 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -10.841 1.160 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.326 5.326 3 C -0.406 4.406 4 H 0.082 0.918 5 C -0.239 4.239 6 N -0.576 5.576 7 Si 0.801 3.199 8 H -0.205 1.205 9 H -0.213 1.213 10 H -0.202 1.202 11 C 0.071 3.929 12 H 0.102 0.898 13 N -0.306 5.306 14 C -0.079 4.079 15 C -0.247 4.247 16 C 0.196 3.804 17 O -0.353 6.353 18 H 0.046 0.954 19 H 0.038 0.962 20 H 0.042 0.958 21 H 0.062 0.938 22 H 0.163 0.837 23 H 0.116 0.884 24 H 0.135 0.865 25 H 0.136 0.864 26 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.716 -10.493 1.149 10.580 hybrid contribution -0.378 1.232 0.791 1.512 sum 0.338 -9.261 1.940 9.468 Atomic orbital electron populations 1.20594 0.81798 0.95988 0.98745 1.44138 1.02414 1.00605 1.85449 1.19419 0.97705 0.86284 1.37163 0.91807 1.25780 0.98276 1.01757 0.98104 1.70196 1.18118 1.27755 1.41486 0.85188 0.77482 0.79201 0.78022 1.20494 1.21261 1.20246 1.22312 0.97091 0.84293 0.89162 0.89758 1.63514 1.22900 1.02921 1.41277 1.23276 1.04782 0.91080 0.88746 1.23471 1.03194 0.96150 1.01933 1.27309 0.72629 0.89218 0.91203 1.90301 1.41319 1.69524 1.34143 0.95392 0.96160 0.95772 0.93816 0.83658 0.88437 0.86530 0.86357 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.40 7.47 127.77 0.95 9.36 15 2 N -0.60 -30.85 2.93 -714.54 -2.09 -32.94 15 3 C -0.28 -15.83 9.63 84.04 0.81 -15.02 15 4 H 0.06 3.67 7.85 -2.91 -0.02 3.65 15 5 C -0.04 -2.47 5.14 84.86 0.44 -2.03 15 6 N -0.93 -54.58 10.52 21.65 0.23 -54.35 15 7 Si 0.97 46.14 29.57 68.60 2.03 48.17 15 8 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 9 H -0.29 -13.38 7.11 99.48 0.71 -12.67 15 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 11 C 0.27 11.33 3.75 128.56 0.48 11.82 15 12 H 0.08 3.78 7.95 -2.39 -0.02 3.76 15 13 N -0.67 -22.65 7.53 -493.81 -3.72 -26.37 15 14 C 0.05 1.13 7.60 86.56 0.66 1.78 15 15 C -0.21 -5.17 6.95 30.98 0.22 -4.96 15 16 C 0.32 12.46 7.35 29.85 0.22 12.68 15 17 O -0.48 -22.19 17.99 -1.45 -0.03 -22.22 15 18 H 0.03 1.12 7.51 -2.39 -0.02 1.10 15 19 H 0.02 1.08 7.17 -2.39 -0.02 1.06 15 20 H 0.02 1.24 7.39 -2.38 -0.02 1.22 15 21 H 0.25 14.30 8.31 -92.71 -0.77 13.53 15 22 H 0.34 11.82 6.82 -89.69 -0.61 11.21 15 23 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 24 H 0.12 1.85 8.14 -2.39 -0.02 1.83 15 25 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.11 2.57 8.14 -2.38 -0.02 2.55 15 Total: -1.00 -67.70 223.33 0.76 -66.94 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.57 Total: 7.16 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 3.78 Total: 13.62 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -5.58 Total: -113.66 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.03 Total: -22.22 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -67.70 0.76 -66.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874698.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.372 kcal (2) G-P(sol) polarization free energy of solvation -67.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds