Wall clock time and date at job start Mon Mar 30 2020 02:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99892 * 2 1 4 4 C 1.53008 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47243 * 59.99398 * 3 2 1 6 6 H 1.07993 * 120.00298 * 239.99676 * 5 3 2 7 7 C 1.37878 * 120.00008 * 60.00631 * 5 3 2 8 8 N 1.31513 * 119.99887 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00114 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47136 * 89.99740 * 9 7 5 11 11 H 1.48500 * 109.47338 * 209.99586 * 9 7 5 12 12 H 1.48496 * 109.47115 * 329.99708 * 9 7 5 13 13 C 1.52995 * 109.47097 * 299.99261 * 3 2 1 14 14 C 1.53003 * 109.47289 * 300.00425 * 13 3 2 15 15 C 1.53001 * 117.51964 * 116.28130 * 14 13 3 16 16 C 1.52999 * 60.00190 * 107.47982 * 15 14 13 17 17 H 1.09003 * 109.47107 * 180.02562 * 1 2 3 18 18 H 1.08993 * 109.47575 * 300.00483 * 1 2 3 19 19 H 1.08998 * 109.46669 * 60.00706 * 1 2 3 20 20 H 1.08999 * 109.46652 * 179.97438 * 4 3 2 21 21 H 1.08997 * 109.46910 * 299.99460 * 4 3 2 22 22 H 1.08998 * 109.47202 * 60.00173 * 4 3 2 23 23 H 0.97010 * 120.00190 * 180.02562 * 8 7 5 24 24 H 1.08999 * 109.47504 * 179.97438 * 13 3 2 25 25 H 1.09005 * 109.46851 * 60.00015 * 13 3 2 26 26 H 1.09002 * 115.54973 * 330.57913 * 14 13 3 27 27 H 1.09001 * 117.49733 * 214.97413 * 15 14 13 28 28 H 1.08995 * 117.49577 * 359.97438 * 15 14 13 29 29 H 1.09004 * 117.50150 * 252.51496 * 16 15 14 30 30 H 1.09004 * 117.49681 * 107.48417 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5654 2.0534 1.2303 6 1 1.0158 2.9777 1.1312 7 6 1.8603 1.5576 2.4827 8 7 2.5292 0.4318 2.6034 9 14 1.3096 2.4850 4.0078 10 1 -0.0400 2.0157 4.4122 11 1 2.2712 2.2374 5.1120 12 1 1.2597 3.9393 3.7117 13 6 1.5589 2.0646 -1.2493 14 6 2.0104 1.3053 -2.4985 15 6 0.9226 0.7543 -3.4226 16 6 1.7545 1.9630 -3.8561 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5139 0.8899 19 1 -0.3632 0.5137 -0.8901 20 1 3.9787 2.1804 0.0002 21 1 3.8567 0.6440 0.8909 22 1 3.8575 0.6436 -0.8891 23 1 2.7364 0.0828 3.4845 24 1 2.0018 3.0606 -1.2491 25 1 0.4722 2.1507 -1.2494 26 1 2.9217 0.7177 -2.3877 27 1 1.1183 -0.1958 -3.9197 28 1 -0.1151 0.9324 -3.1405 29 1 1.2642 2.9365 -3.8592 30 1 2.4976 1.8080 -4.6383 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259934162.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:01 Heat of formation + Delta-G solvation = -27.385004 kcal Electronic energy + Delta-G solvation = -11921.010170 eV Core-core repulsion = 9910.292228 eV Total energy + Delta-G solvation = -2010.717942 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.94730 -35.74855 -32.55333 -30.58080 -26.39958 -25.33307 -24.61242 -21.92320 -20.75625 -18.60531 -16.53343 -15.43079 -14.61615 -13.95580 -13.83920 -13.57175 -13.15932 -12.38030 -11.54810 -11.39696 -11.16347 -11.05195 -10.91034 -10.74569 -10.41169 -10.17491 -10.12183 -9.92699 -9.40040 -9.14264 -8.62478 -8.45269 -7.71964 -5.91805 -4.10947 3.29098 3.36572 3.39384 4.36920 4.42963 5.23108 5.30418 5.49672 5.54209 5.72606 6.00609 6.11179 6.34744 6.43834 6.54138 6.58881 6.67196 6.74099 6.79373 7.03580 7.07475 7.17501 7.24733 7.57300 7.80638 8.12566 8.35402 8.86450 9.18764 9.62284 11.07450 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.060258 B = 0.012791 C = 0.012565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.554023 B = 2188.523887 C = 2227.962863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.374 6.374 3 C 0.238 3.762 4 C -0.124 4.124 5 C -0.553 4.553 6 H 0.053 0.947 7 C 0.081 3.919 8 N -0.857 5.857 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C -0.108 4.108 14 C -0.128 4.128 15 C -0.182 4.182 16 C -0.198 4.198 17 H 0.047 0.953 18 H 0.038 0.962 19 H 0.013 0.987 20 H 0.037 0.963 21 H 0.087 0.913 22 H 0.018 0.982 23 H 0.259 0.741 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 1.273 -6.692 7.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.292 6.292 3 C 0.200 3.800 4 C -0.181 4.181 5 C -0.591 4.591 6 H 0.071 0.929 7 C -0.124 4.124 8 N -0.493 5.493 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C -0.146 4.146 14 C -0.145 4.145 15 C -0.219 4.219 16 C -0.235 4.235 17 H 0.065 0.935 18 H 0.057 0.943 19 H 0.032 0.968 20 H 0.056 0.944 21 H 0.106 0.894 22 H 0.037 0.963 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.123 0.877 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.481 0.976 -6.562 6.797 hybrid contribution -0.601 0.754 0.856 1.290 sum -2.082 1.730 -5.705 6.315 Atomic orbital electron populations 1.22166 0.85099 0.98519 0.98584 1.87847 1.16497 1.30410 1.94486 1.18956 0.90852 0.80657 0.89525 1.21663 0.95869 0.99484 1.01126 1.21494 1.37725 1.08776 0.91132 0.92866 1.24968 0.94241 0.94487 0.98711 1.69994 1.37540 1.18826 1.22942 0.86753 0.78569 0.80425 0.83149 1.20683 1.21132 1.19910 1.21853 0.99809 0.98649 0.94289 1.22487 0.99844 1.01735 0.90483 1.22888 0.96900 0.97001 1.05084 1.22948 1.03889 0.97066 0.99581 0.93452 0.94339 0.96832 0.94357 0.89399 0.96306 0.93131 0.92312 0.92990 0.87696 0.89726 0.89523 0.89586 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.22 10.31 101.05 1.04 2.26 16 2 O -0.37 -9.70 9.37 -35.23 -0.33 -10.03 16 3 C 0.24 5.95 0.40 -91.77 -0.04 5.92 16 4 C -0.12 -3.04 8.38 37.16 0.31 -2.73 16 5 C -0.55 -15.06 6.76 -34.44 -0.23 -15.29 16 6 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.08 2.23 5.24 -17.82 -0.09 2.14 16 8 N -0.86 -24.46 10.87 55.43 0.60 -23.86 16 9 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C -0.11 -2.32 4.11 -26.73 -0.11 -2.43 16 14 C -0.13 -2.39 5.17 -90.61 -0.47 -2.86 16 15 C -0.18 -2.98 9.99 -26.73 -0.27 -3.25 16 16 C -0.20 -3.07 10.25 -26.73 -0.27 -3.34 16 17 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 18 H 0.04 0.93 7.15 -51.93 -0.37 0.56 16 19 H 0.01 0.28 5.88 -51.93 -0.31 -0.03 16 20 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 22 H 0.02 0.41 6.14 -51.93 -0.32 0.09 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.05 1.11 6.28 -51.93 -0.33 0.78 16 26 H 0.11 2.06 6.07 -51.93 -0.32 1.74 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.09 1.41 7.68 -51.93 -0.40 1.01 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 241.89 15.07 3.65 3.65 Total: -1.00 -28.54 241.89 -5.66 -34.21 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.43 Total: -0.48 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -0.13 Total: -19.57 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.60 Total: -23.86 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.33 Total: -10.03 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.54 -5.66 -34.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259934162.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.821 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds