Wall clock time and date at job start Mon Mar 30 2020 02:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99498 * 2 1 4 4 H 1.48494 * 109.47376 * 239.99712 * 3 2 1 5 5 H 1.48496 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 119.99721 * 3 2 1 7 7 C 1.37873 * 120.00522 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 11 11 C 1.52997 * 109.47265 * 60.00233 * 9 7 2 12 12 C 1.53002 * 109.46978 * 59.99674 * 11 9 7 13 13 C 1.52996 * 109.46891 * 60.00410 * 12 11 9 14 14 C 1.53000 * 109.47328 * 299.99597 * 13 12 11 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 17 17 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47478 * 295.00066 * 17 15 14 19 19 H 0.96992 * 120.00310 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47045 * 299.99841 * 11 9 7 21 21 H 1.09001 * 109.47375 * 179.97438 * 11 9 7 22 22 H 1.08992 * 109.47056 * 300.00064 * 12 11 9 23 23 H 1.09004 * 109.47006 * 180.02562 * 12 11 9 24 24 H 1.09004 * 109.47368 * 179.97438 * 13 12 11 25 25 H 1.09001 * 109.47372 * 59.99964 * 13 12 11 26 26 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 27 27 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 28 28 H 1.09002 * 109.46906 * 55.00224 * 17 15 14 29 29 H 1.09006 * 109.47717 * 174.99599 * 17 15 14 30 30 H 0.96699 * 114.00451 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5571 0.8897 11 6 0.3712 -2.5800 -1.2494 12 6 1.2504 -2.4985 -2.4990 13 6 2.2446 -3.6614 -2.4996 14 6 3.1247 -3.5806 -1.2507 15 6 2.2456 -3.6619 -0.0011 16 1 1.7006 -4.6059 -0.0011 17 6 3.1255 -3.5805 1.2478 18 8 3.9749 -4.7281 1.3078 19 1 -0.4850 0.8400 -0.0004 20 1 -0.3372 -1.7515 -1.2490 21 1 -0.1734 -3.5242 -1.2497 22 1 1.7952 -1.5546 -2.4989 23 1 0.6233 -2.5557 -3.3888 24 1 2.8707 -3.6037 -3.3900 25 1 1.6997 -4.6054 -2.4996 26 1 3.8334 -4.4088 -1.2513 27 1 3.6697 -2.6366 -1.2506 28 1 3.7360 -2.6785 1.2039 29 1 2.4941 -3.5489 2.1358 30 1 4.5622 -4.7431 2.0759 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259947450.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:00 Heat of formation + Delta-G solvation = -81.360162 kcal Electronic energy + Delta-G solvation = -11973.472725 eV Core-core repulsion = 9960.414245 eV Total energy + Delta-G solvation = -2013.058480 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.12265 -35.65818 -32.51526 -30.60837 -29.16423 -25.29040 -24.09993 -21.19133 -20.07895 -18.66318 -16.58082 -15.64993 -14.67149 -14.25642 -14.05945 -13.31012 -12.88866 -12.72477 -11.99393 -11.52328 -11.16014 -10.90217 -10.81578 -10.61258 -10.50307 -10.03087 -9.99403 -9.54515 -9.31950 -8.98703 -8.80026 -8.50369 -8.20564 -5.94935 -3.99457 3.31638 3.37115 3.39396 4.45214 4.97301 5.36795 5.70317 5.86624 5.93383 6.15602 6.23127 6.49682 6.60457 6.64011 6.76958 6.81069 6.84606 6.88499 6.97769 7.25072 7.30761 7.56034 7.60411 7.77542 7.95935 8.18049 8.22160 8.50208 9.01767 9.63384 11.10835 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.036514 B = 0.016809 C = 0.013928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.649543 B = 1665.342898 C = 2009.786443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.502 4.502 8 H 0.056 0.944 9 C 0.052 3.948 10 H 0.024 0.976 11 C -0.107 4.107 12 C -0.104 4.104 13 C -0.112 4.112 14 C -0.098 4.098 15 C -0.073 4.073 16 H 0.046 0.954 17 C 0.085 3.915 18 O -0.585 6.585 19 H 0.259 0.741 20 H 0.090 0.910 21 H 0.013 0.987 22 H 0.069 0.931 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 -4.398 -0.395 6.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.034 3.966 10 H 0.042 0.958 11 C -0.145 4.145 12 C -0.141 4.141 13 C -0.149 4.149 14 C -0.135 4.135 15 C -0.091 4.091 16 H 0.065 0.935 17 C 0.008 3.992 18 O -0.389 6.389 19 H 0.069 0.931 20 H 0.109 0.891 21 H 0.032 0.968 22 H 0.087 0.913 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.696 -4.402 -0.958 5.827 hybrid contribution 0.706 1.158 0.539 1.459 sum 4.401 -3.243 -0.419 5.483 Atomic orbital electron populations 1.69859 1.05826 1.26304 1.50978 1.24933 0.94748 0.98765 0.95456 0.86789 0.79697 0.83760 0.78538 1.20343 1.21427 1.20455 1.21121 0.92666 0.90358 1.49884 0.92589 1.18663 0.92183 0.91390 0.94392 0.95804 1.21496 0.98668 0.99310 0.95048 1.21382 0.97139 0.98442 0.97151 1.21481 0.97847 0.98581 0.97016 1.21374 0.97201 1.00763 0.94170 1.21164 0.96169 0.99421 0.92378 0.93538 1.22360 0.91996 0.86510 0.98332 1.86473 1.55964 1.46687 1.49788 0.93086 0.89126 0.96816 0.91253 0.95165 0.93982 0.93744 0.93936 0.91644 0.92893 0.94542 0.79038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.50 -13.12 5.94 -34.44 -0.20 -13.33 16 8 H 0.06 1.45 5.68 -52.48 -0.30 1.15 16 9 C 0.05 1.28 2.12 -91.77 -0.19 1.09 16 10 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 11 C -0.11 -2.56 5.24 -26.73 -0.14 -2.70 16 12 C -0.10 -2.25 5.70 -26.73 -0.15 -2.40 16 13 C -0.11 -2.18 5.92 -26.73 -0.16 -2.34 16 14 C -0.10 -2.00 4.87 -26.73 -0.13 -2.13 16 15 C -0.07 -1.57 2.19 -90.62 -0.20 -1.77 16 16 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 17 C 0.08 1.68 6.07 37.15 0.23 1.90 16 18 O -0.58 -10.32 13.20 -35.23 -0.46 -10.79 16 19 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 20 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.07 1.64 7.22 -51.93 -0.37 1.26 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.83 7.82 -51.93 -0.41 0.42 16 27 H 0.06 1.42 6.62 -51.93 -0.34 1.07 16 28 H 0.05 1.08 6.79 -51.93 -0.35 0.72 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.36 4.53 9.12 45.56 0.42 4.95 16 LS Contribution 233.35 15.07 3.52 3.52 Total: -1.00 -28.22 233.35 -6.16 -34.38 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.77 Total: 1.46 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -1.05 Total: -20.11 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.63 Total: -24.39 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.46 Total: -10.79 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.22 -6.16 -34.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947450.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.985 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds