Wall clock time and date at job start Mon Mar 30 2020 02:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99498 * 2 1 4 4 H 1.48494 * 109.47376 * 239.99712 * 3 2 1 5 5 H 1.48496 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 119.99721 * 3 2 1 7 7 C 1.37873 * 120.00522 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 11 11 C 1.52997 * 109.47265 * 60.00233 * 9 7 2 12 12 C 1.53002 * 109.46978 * 59.99674 * 11 9 7 13 13 C 1.52996 * 109.46891 * 60.00410 * 12 11 9 14 14 C 1.53000 * 109.47328 * 299.99597 * 13 12 11 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 17 17 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47478 * 295.00066 * 17 15 14 19 19 H 0.96992 * 120.00310 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47045 * 299.99841 * 11 9 7 21 21 H 1.09001 * 109.47375 * 179.97438 * 11 9 7 22 22 H 1.08992 * 109.47056 * 300.00064 * 12 11 9 23 23 H 1.09004 * 109.47006 * 180.02562 * 12 11 9 24 24 H 1.09004 * 109.47368 * 179.97438 * 13 12 11 25 25 H 1.09001 * 109.47372 * 59.99964 * 13 12 11 26 26 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 27 27 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 28 28 H 1.09002 * 109.46906 * 55.00224 * 17 15 14 29 29 H 1.09006 * 109.47717 * 174.99599 * 17 15 14 30 30 H 0.96699 * 114.00451 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5571 0.8897 11 6 0.3712 -2.5800 -1.2494 12 6 1.2504 -2.4985 -2.4990 13 6 2.2446 -3.6614 -2.4996 14 6 3.1247 -3.5806 -1.2507 15 6 2.2456 -3.6619 -0.0011 16 1 1.7006 -4.6059 -0.0011 17 6 3.1255 -3.5805 1.2478 18 8 3.9749 -4.7281 1.3078 19 1 -0.4850 0.8400 -0.0004 20 1 -0.3372 -1.7515 -1.2490 21 1 -0.1734 -3.5242 -1.2497 22 1 1.7952 -1.5546 -2.4989 23 1 0.6233 -2.5557 -3.3888 24 1 2.8707 -3.6037 -3.3900 25 1 1.6997 -4.6054 -2.4996 26 1 3.8334 -4.4088 -1.2513 27 1 3.6697 -2.6366 -1.2506 28 1 3.7360 -2.6785 1.2039 29 1 2.4941 -3.5489 2.1358 30 1 4.5622 -4.7431 2.0759 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259947450.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:00 Heat of formation + Delta-G solvation = -99.752802 kcal Electronic energy + Delta-G solvation = -11974.270290 eV Core-core repulsion = 9960.414245 eV Total energy + Delta-G solvation = -2013.856045 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.85292 -37.16579 -34.49470 -32.30310 -30.99941 -27.21134 -25.84907 -22.95099 -21.78453 -20.51231 -18.06310 -17.63839 -16.54693 -16.01556 -15.68388 -14.94036 -14.74569 -14.43014 -13.68659 -13.31850 -12.95230 -12.76927 -12.60173 -12.45001 -12.20779 -11.88269 -11.71033 -11.37235 -10.95319 -10.72786 -10.62333 -10.38920 -10.17706 -8.00789 -6.10579 1.43475 1.44540 1.50830 2.47303 3.26110 3.58831 4.07373 4.24674 4.26228 4.53086 4.61767 4.81323 4.88933 4.99185 5.04645 5.09081 5.14490 5.22360 5.27632 5.50425 5.59042 5.68004 5.78374 5.79887 5.99445 6.21557 6.47281 6.97528 7.01571 7.54909 9.04098 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.036514 B = 0.016809 C = 0.013928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.649543 B = 1665.342898 C = 2009.786443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.057 0.943 9 C 0.050 3.950 10 H -0.010 1.010 11 C -0.107 4.107 12 C -0.099 4.099 13 C -0.107 4.107 14 C -0.092 4.092 15 C -0.073 4.073 16 H 0.047 0.953 17 C 0.094 3.906 18 O -0.588 6.588 19 H 0.257 0.743 20 H 0.059 0.941 21 H 0.023 0.977 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.558 -5.032 -0.911 7.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.032 3.968 10 H 0.008 0.992 11 C -0.145 4.145 12 C -0.136 4.136 13 C -0.145 4.145 14 C -0.130 4.130 15 C -0.092 4.092 16 H 0.065 0.935 17 C 0.017 3.983 18 O -0.396 6.396 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.042 0.958 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.100 -5.048 -1.458 7.322 hybrid contribution 0.272 1.300 0.739 1.520 sum 5.372 -3.749 -0.719 6.590 Atomic orbital electron populations 1.70007 1.07117 1.26725 1.52188 1.25618 0.95414 1.01818 0.95544 0.85878 0.78521 0.80122 0.78756 1.19790 1.21633 1.19778 1.21337 0.92742 0.91070 1.48831 0.92469 1.18611 0.92534 0.92406 0.93257 0.99226 1.21411 0.98526 0.98482 0.96087 1.21296 0.97336 0.98435 0.96565 1.21457 0.97499 0.97911 0.97606 1.21316 0.97186 1.00546 0.93918 1.21077 0.96092 0.97819 0.94190 0.93481 1.22069 0.91927 0.86959 0.97335 1.86399 1.56197 1.45393 1.51579 0.93394 0.92255 0.95811 0.93606 0.93431 0.91456 0.92455 0.92405 0.93069 0.93682 0.94802 0.76146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.70 11.32 21.45 0.24 -52.46 16 2 C 0.01 0.75 5.30 84.65 0.45 1.20 16 3 Si 0.94 42.96 29.54 68.60 2.03 44.99 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.50 -26.25 5.94 25.60 0.15 -26.10 16 8 H 0.06 2.94 5.68 -2.91 -0.02 2.92 16 9 C 0.05 2.50 2.12 -11.54 -0.02 2.47 16 10 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 11 C -0.11 -5.12 5.24 30.59 0.16 -4.96 16 12 C -0.10 -4.16 5.70 30.59 0.17 -3.98 16 13 C -0.11 -3.88 5.92 30.59 0.18 -3.70 16 14 C -0.09 -3.57 4.87 30.59 0.15 -3.42 16 15 C -0.07 -3.07 2.19 -10.79 -0.02 -3.10 16 16 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 17 C 0.09 3.60 6.07 71.98 0.44 4.04 16 18 O -0.59 -19.16 13.20 -148.98 -1.97 -21.12 16 19 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 20 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 21 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.05 2.13 7.22 -2.39 -0.02 2.11 16 23 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 2.07 7.82 -2.39 -0.02 2.05 16 27 H 0.05 2.12 6.62 -2.39 -0.02 2.10 16 28 H 0.04 1.78 6.79 -2.39 -0.02 1.76 16 29 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.39 8.49 9.12 -74.06 -0.68 7.82 16 Total: -1.00 -59.09 233.35 2.40 -56.70 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.44 Total: 9.45 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 1.65 Total: -37.55 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.24 Total: -52.46 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.97 Total: -21.12 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -59.09 2.40 -56.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947450.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.057 kcal (2) G-P(sol) polarization free energy of solvation -59.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds