Wall clock time and date at job start Mon Mar 30 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99840 * 2 1 4 4 H 1.48505 * 109.46841 * 269.99730 * 3 2 1 5 5 H 1.48494 * 109.47129 * 29.99954 * 3 2 1 6 6 H 1.48501 * 109.47268 * 150.00045 * 3 2 1 7 7 C 1.37884 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99619 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99909 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.47304 * 59.99637 * 9 7 2 11 11 C 1.53006 * 109.47184 * 299.99693 * 9 7 2 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46817 * 60.00361 * 12 11 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 11 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 16 16 H 1.08993 * 109.47194 * 60.00154 * 15 14 13 17 17 C 1.53006 * 109.46943 * 179.97438 * 15 14 13 18 18 O 1.42897 * 109.47254 * 294.99971 * 17 15 14 19 19 H 0.97001 * 120.00117 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46801 * 300.00442 * 11 9 7 21 21 H 1.09001 * 109.46998 * 60.00038 * 11 9 7 22 22 H 1.09002 * 109.47153 * 180.02562 * 12 11 9 23 23 H 1.08996 * 109.46952 * 300.00302 * 12 11 9 24 24 H 1.08996 * 109.47407 * 60.00219 * 13 12 11 25 25 H 1.09000 * 109.46986 * 179.97438 * 13 12 11 26 26 H 1.09001 * 109.46993 * 180.02562 * 14 13 12 27 27 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 28 28 H 1.09001 * 109.47164 * 55.00166 * 17 15 14 29 29 H 1.08998 * 109.46741 * 174.99515 * 17 15 14 30 30 H 0.96702 * 113.99667 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8746 -0.6799 0.8910 11 6 4.0221 -0.4730 -1.2482 12 6 5.5520 -0.4734 -1.2479 13 6 6.0615 -1.9161 -1.2477 14 6 5.5511 -2.6370 0.0015 15 6 4.0211 -2.6366 0.0012 16 1 3.6578 -3.1504 -0.8887 17 6 3.5107 -3.3581 1.2502 18 8 3.8884 -4.7351 1.1926 19 1 -0.4850 0.8400 -0.0004 20 1 3.6590 -0.9871 -2.1381 21 1 3.6586 0.5547 -1.2486 22 1 5.9157 0.0406 -2.1377 23 1 5.9153 0.0404 -0.3579 24 1 5.6983 -2.4299 -2.1377 25 1 7.1515 -1.9165 -1.2480 26 1 5.9145 -3.6647 0.0019 27 1 5.9145 -2.1233 0.8915 28 1 3.9453 -2.8990 2.1382 29 1 2.4245 -3.2808 1.2960 30 1 3.5975 -5.2548 1.9544 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259947453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:02 Heat of formation + Delta-G solvation = -76.792463 kcal Electronic energy + Delta-G solvation = -11869.231170 eV Core-core repulsion = 9856.370760 eV Total energy + Delta-G solvation = -2012.860410 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.33304 -35.74758 -32.80920 -30.87723 -30.13254 -25.42279 -24.03563 -21.34159 -20.24718 -18.87297 -16.74003 -16.57102 -15.09556 -14.32958 -13.82309 -13.43120 -13.18565 -13.04465 -12.54987 -12.19342 -11.42219 -11.29064 -10.86774 -10.71689 -10.38788 -10.30635 -9.97274 -9.80421 -9.53348 -9.33670 -8.93470 -8.67451 -8.48822 -6.06275 -4.05033 3.28339 3.38899 3.41367 4.42283 4.89347 5.26044 5.40651 5.49783 5.52039 5.85932 6.09110 6.14157 6.19021 6.27293 6.36073 6.36778 6.50295 6.60909 6.69308 6.76808 6.87472 7.03581 7.07175 7.24515 7.59988 7.79697 8.18690 8.53431 8.97379 9.56756 11.06666 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.037289 B = 0.017819 C = 0.012988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.707164 B = 1570.966543 C = 2155.346418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.026 0.974 11 C -0.119 4.119 12 C -0.123 4.123 13 C -0.113 4.113 14 C -0.111 4.111 15 C -0.064 4.064 16 H 0.067 0.933 17 C 0.082 3.918 18 O -0.584 6.584 19 H 0.263 0.737 20 H 0.059 0.941 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 -2.939 0.780 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.094 0.906 9 C 0.002 3.998 10 H 0.044 0.956 11 C -0.156 4.156 12 C -0.161 4.161 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.083 4.083 16 H 0.086 0.914 17 C 0.005 3.995 18 O -0.388 6.388 19 H 0.073 0.927 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 9.521 -2.623 0.211 9.878 hybrid contribution 0.051 0.907 0.482 1.028 sum 9.572 -1.716 0.692 9.749 Atomic orbital electron populations 1.69902 1.06286 1.26880 1.50993 1.25028 0.94662 0.99026 0.94497 0.86854 0.79900 0.83630 0.77886 1.20645 1.22710 1.19032 1.21118 0.88899 0.94400 1.50733 0.90640 1.19116 0.96434 0.90757 0.93511 0.95586 1.21936 0.92645 0.99940 1.01071 1.21628 0.97863 0.96200 1.00383 1.21479 0.98728 0.96222 0.98646 1.21568 0.96711 0.99402 0.97205 1.20987 0.93237 0.97130 0.96903 0.91415 1.22373 0.99782 0.79599 0.97756 1.86441 1.81798 1.22511 1.48076 0.92732 0.92191 0.93656 0.93372 0.92843 0.92362 0.93237 0.92444 0.93003 0.94819 0.91801 0.78780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 2 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 3 Si 0.89 22.07 24.37 -169.99 -4.14 17.93 16 4 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.33 6.53 56.52 0.37 -5.97 16 7 C -0.51 -14.18 8.35 -34.44 -0.29 -14.46 16 8 H 0.08 2.25 6.97 -52.49 -0.37 1.88 16 9 C 0.02 0.48 1.23 -91.77 -0.11 0.37 16 10 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 11 C -0.12 -2.59 4.68 -26.73 -0.13 -2.71 16 12 C -0.12 -2.22 5.92 -26.73 -0.16 -2.38 16 13 C -0.11 -1.87 5.92 -26.73 -0.16 -2.02 16 14 C -0.11 -1.98 5.10 -26.73 -0.14 -2.11 16 15 C -0.06 -1.32 1.91 -90.62 -0.17 -1.49 16 16 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 17 C 0.08 1.59 6.26 37.16 0.23 1.82 16 18 O -0.58 -10.11 13.19 -35.23 -0.46 -10.57 16 19 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 20 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 21 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.98 7.82 -51.93 -0.41 0.58 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.36 6.47 -51.93 -0.34 1.02 16 30 H 0.37 4.50 9.12 45.56 0.42 4.92 16 LS Contribution 231.16 15.07 3.48 3.48 Total: -1.00 -30.26 231.16 -5.17 -35.43 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.80 Total: 1.58 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.02 Total: -21.11 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.46 Total: -10.57 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.26 -5.17 -35.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.365 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds