Wall clock time and date at job start Mon Mar 30 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99840 * 2 1 4 4 H 1.48505 * 109.46841 * 269.99730 * 3 2 1 5 5 H 1.48494 * 109.47129 * 29.99954 * 3 2 1 6 6 H 1.48501 * 109.47268 * 150.00045 * 3 2 1 7 7 C 1.37884 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99619 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99909 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.47304 * 59.99637 * 9 7 2 11 11 C 1.53006 * 109.47184 * 299.99693 * 9 7 2 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46817 * 60.00361 * 12 11 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 11 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 16 16 H 1.08993 * 109.47194 * 60.00154 * 15 14 13 17 17 C 1.53006 * 109.46943 * 179.97438 * 15 14 13 18 18 O 1.42897 * 109.47254 * 294.99971 * 17 15 14 19 19 H 0.97001 * 120.00117 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46801 * 300.00442 * 11 9 7 21 21 H 1.09001 * 109.46998 * 60.00038 * 11 9 7 22 22 H 1.09002 * 109.47153 * 180.02562 * 12 11 9 23 23 H 1.08996 * 109.46952 * 300.00302 * 12 11 9 24 24 H 1.08996 * 109.47407 * 60.00219 * 13 12 11 25 25 H 1.09000 * 109.46986 * 179.97438 * 13 12 11 26 26 H 1.09001 * 109.46993 * 180.02562 * 14 13 12 27 27 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 28 28 H 1.09001 * 109.47164 * 55.00166 * 17 15 14 29 29 H 1.08998 * 109.46741 * 174.99515 * 17 15 14 30 30 H 0.96702 * 113.99667 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8746 -0.6799 0.8910 11 6 4.0221 -0.4730 -1.2482 12 6 5.5520 -0.4734 -1.2479 13 6 6.0615 -1.9161 -1.2477 14 6 5.5511 -2.6370 0.0015 15 6 4.0211 -2.6366 0.0012 16 1 3.6578 -3.1504 -0.8887 17 6 3.5107 -3.3581 1.2502 18 8 3.8884 -4.7351 1.1926 19 1 -0.4850 0.8400 -0.0004 20 1 3.6590 -0.9871 -2.1381 21 1 3.6586 0.5547 -1.2486 22 1 5.9157 0.0406 -2.1377 23 1 5.9153 0.0404 -0.3579 24 1 5.6983 -2.4299 -2.1377 25 1 7.1515 -1.9165 -1.2480 26 1 5.9145 -3.6647 0.0019 27 1 5.9145 -2.1233 0.8915 28 1 3.9453 -2.8990 2.1382 29 1 2.4245 -3.2808 1.2960 30 1 3.5975 -5.2548 1.9544 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259947453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:02 Heat of formation + Delta-G solvation = -98.894436 kcal Electronic energy + Delta-G solvation = -11870.189583 eV Core-core repulsion = 9856.370760 eV Total energy + Delta-G solvation = -2013.818823 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.92937 -37.20489 -34.83674 -32.48261 -31.86591 -27.20222 -25.74359 -23.05164 -21.77430 -20.50277 -18.80589 -18.08858 -16.90369 -15.87081 -15.51167 -15.02628 -14.86241 -14.70970 -14.38960 -13.71846 -13.12822 -12.95485 -12.55876 -12.30945 -12.12014 -11.94057 -11.65253 -11.58424 -11.21231 -10.90910 -10.83680 -10.50220 -10.39501 -8.27913 -6.30517 1.30904 1.35733 1.46641 2.33590 3.06520 3.50052 3.96549 4.01991 4.12325 4.34472 4.54709 4.61806 4.68023 4.78510 4.83071 4.88850 4.94571 5.10368 5.17092 5.27781 5.40247 5.42227 5.49479 5.58551 5.73625 5.83465 6.34833 6.76194 6.97349 7.34488 8.88634 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.037289 B = 0.017819 C = 0.012988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.707164 B = 1570.966543 C = 2155.346418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.010 3.990 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.302 1.302 6 H -0.244 1.244 7 C -0.513 4.513 8 H 0.035 0.965 9 C 0.022 3.978 10 H 0.025 0.975 11 C -0.122 4.122 12 C -0.119 4.119 13 C -0.111 4.111 14 C -0.104 4.104 15 C -0.066 4.066 16 H 0.046 0.954 17 C 0.090 3.910 18 O -0.587 6.587 19 H 0.264 0.736 20 H 0.049 0.951 21 H 0.033 0.967 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.031 0.969 30 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.334 -2.477 0.808 12.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.230 1.230 6 H -0.168 1.168 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.003 3.997 10 H 0.043 0.957 11 C -0.159 4.159 12 C -0.156 4.156 13 C -0.148 4.148 14 C -0.142 4.142 15 C -0.085 4.085 16 H 0.064 0.936 17 C 0.012 3.988 18 O -0.395 6.395 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.051 0.949 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 12.456 -2.191 0.249 12.650 hybrid contribution -0.930 0.619 0.492 1.221 sum 11.526 -1.572 0.741 11.656 Atomic orbital electron populations 1.70055 1.08207 1.27847 1.53198 1.25875 0.95368 1.02931 0.94457 0.85853 0.79256 0.78855 0.78523 1.19584 1.23000 1.16778 1.21426 0.91566 0.92798 1.49304 0.94639 1.19071 0.93296 0.93025 0.94345 0.95674 1.21880 0.96038 0.98556 0.99441 1.21603 0.94330 0.97723 1.01962 1.21491 1.00713 0.94845 0.97766 1.21509 0.93700 1.00470 0.98494 1.20936 0.95892 0.95198 0.96465 0.93569 1.22116 0.97822 0.80946 0.97892 1.86378 1.81659 1.21565 1.49859 0.92724 0.93225 0.94860 0.90991 0.92074 0.92484 0.89861 0.91484 0.92048 0.93363 0.95046 0.76093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 2 C 0.01 0.59 5.45 84.66 0.46 1.05 16 3 Si 0.95 45.33 24.37 68.60 1.67 47.00 16 4 H -0.27 -12.38 6.87 99.48 0.68 -11.70 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.24 -10.73 6.53 99.48 0.65 -10.08 16 7 C -0.51 -29.11 8.35 25.60 0.21 -28.89 16 8 H 0.04 2.24 6.97 -2.91 -0.02 2.22 16 9 C 0.02 0.99 1.23 -11.54 -0.01 0.97 16 10 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 11 C -0.12 -5.08 4.68 30.60 0.14 -4.94 16 12 C -0.12 -3.79 5.92 30.59 0.18 -3.61 16 13 C -0.11 -3.19 5.92 30.59 0.18 -3.00 16 14 C -0.10 -3.35 5.10 30.59 0.16 -3.20 16 15 C -0.07 -2.67 1.91 -10.79 -0.02 -2.69 16 16 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 17 C 0.09 3.44 6.26 71.98 0.45 3.89 16 18 O -0.59 -19.41 13.19 -148.98 -1.97 -21.38 16 19 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 20 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 21 H 0.03 1.46 3.27 -2.39 -0.01 1.45 16 22 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.05 7.82 -2.39 -0.02 2.03 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.39 6.47 -2.39 -0.02 1.37 16 30 H 0.39 8.85 9.12 -74.06 -0.68 8.18 16 Total: -1.00 -65.92 231.16 2.12 -63.80 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.36 Total: 10.74 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 1.75 Total: -40.43 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.30 Total: -59.74 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.97 Total: -21.38 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.67 Total: 47.00 kcal Total: -65.92 2.12 -63.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.093 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds