Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53760 * 87.88426 * 152.97074 * 5 4 2 7 7 N 1.46500 * 114.39313 * 272.67612 * 6 5 4 8 8 C 1.36931 * 120.00194 * 248.58839 * 7 6 5 9 9 H 1.08002 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.38819 * 120.00149 * 180.02562 * 8 7 6 11 11 N 1.31618 * 119.99963 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00121 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47290 * 89.99518 * 12 10 8 14 14 H 1.48498 * 109.47227 * 209.99978 * 12 10 8 15 15 H 1.48505 * 109.47152 * 329.99853 * 12 10 8 16 16 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 17 17 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 18 18 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 19 19 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 20 20 H 1.08995 * 113.46676 * 267.70582 * 5 4 2 21 21 H 1.09003 * 113.46340 * 38.14714 * 5 4 2 22 22 H 1.09000 * 114.26454 * 139.79626 * 6 5 4 23 23 H 0.96999 * 119.99736 * 68.59194 * 7 6 5 24 24 H 0.96992 * 120.00011 * 180.02562 * 11 10 8 25 25 H 1.08990 * 113.47221 * 321.86278 * 16 4 2 26 26 H 1.09005 * 113.46914 * 92.24556 * 16 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1646 -2.8713 -0.6996 7 7 3.1095 -2.7767 -2.1605 8 6 3.2513 -3.9036 -2.9254 9 1 3.4042 -4.8621 -2.4517 10 6 3.1996 -3.8139 -4.3097 11 7 3.0138 -2.6458 -4.8870 12 14 3.3924 -5.3512 -5.3531 13 1 2.0583 -5.9588 -5.5908 14 1 4.0117 -4.9920 -6.6542 15 1 4.2605 -6.3253 -4.6439 16 6 3.5942 -1.5740 -0.0002 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 -0.8900 -0.5138 19 1 -0.3633 0.8900 -0.5138 20 1 1.7665 -3.0226 1.0062 21 1 0.9552 -2.8281 -0.6064 22 1 3.6820 -3.7626 -0.3448 23 1 2.9725 -1.9158 -2.5859 24 1 2.9773 -2.5832 -5.8542 25 1 4.2291 -0.9380 -0.6169 26 1 4.0001 -1.7324 0.9989 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966873.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = 12.909738 kcal Electronic energy + Delta-G solvation = -11103.853773 eV Core-core repulsion = 8991.342799 eV Total energy + Delta-G solvation = -2112.510974 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.75524 -37.38563 -33.69877 -31.01487 -29.81583 -27.23000 -25.36031 -23.76222 -20.61594 -18.29601 -17.46540 -16.45470 -15.50941 -15.22224 -14.69835 -13.88868 -13.46041 -12.76051 -12.55608 -12.40492 -12.18562 -11.79566 -11.20846 -10.99159 -10.92580 -10.35222 -10.17661 -9.87380 -9.39744 -9.01496 -8.21511 -7.13922 -5.88407 -3.20628 3.05115 3.35685 3.37866 3.42564 3.45026 4.47187 4.91238 5.14205 5.32827 5.46443 5.56659 5.63908 5.75230 5.86877 5.93826 6.03865 6.14219 6.28957 6.39125 6.68682 7.59660 8.24789 8.28946 8.58319 9.39852 9.93926 10.28602 11.33092 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.062329 B = 0.010018 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.118075 B = 2794.285904 C = 2927.530804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.536 3.464 3 O -0.564 6.564 4 N -0.634 5.634 5 C 0.055 3.945 6 C 0.158 3.842 7 N -0.696 5.696 8 C -0.255 4.255 9 H 0.076 0.924 10 C -0.008 4.008 11 N -0.927 5.927 12 Si 0.912 3.088 13 H -0.288 1.288 14 H -0.291 1.291 15 H -0.280 1.280 16 C 0.077 3.923 17 H 0.086 0.914 18 H 0.079 0.921 19 H 0.088 0.912 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.389 0.611 24 H 0.258 0.742 25 H 0.074 0.926 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -1.241 9.477 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.326 3.674 3 O -0.444 6.444 4 N -0.369 5.369 5 C -0.072 4.072 6 C 0.043 3.957 7 N -0.333 5.333 8 C -0.385 4.385 9 H 0.094 0.906 10 C -0.205 4.205 11 N -0.573 5.573 12 Si 0.743 3.257 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.048 4.048 17 H 0.105 0.895 18 H 0.098 0.902 19 H 0.107 0.893 20 H 0.092 0.908 21 H 0.095 0.905 22 H 0.106 0.894 23 H 0.223 0.777 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.211 -0.649 9.320 9.879 hybrid contribution -0.137 -0.455 -0.669 0.820 sum -3.348 -1.104 8.651 9.342 Atomic orbital electron populations 1.21778 0.91997 1.04750 1.03856 1.20268 0.89940 0.81649 0.75517 1.90673 1.70949 1.30738 1.52059 1.49592 1.09896 1.05713 1.71701 1.24326 1.03870 0.78810 1.00231 1.21486 0.92901 0.95063 0.86206 1.42156 1.84354 1.08777 0.98010 1.19291 1.43191 0.87692 0.88365 0.90579 1.24839 1.01941 0.96972 0.96717 1.69684 1.55376 1.22609 1.09661 0.86124 0.77697 0.82001 0.79905 1.21539 1.21682 1.20520 1.23735 0.84056 0.96804 1.00184 0.89541 0.90159 0.89281 0.90795 0.90479 0.89369 0.77690 0.93192 0.90701 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 10.18 36.01 0.37 -1.90 15 2 C 0.54 10.05 8.19 -10.98 -0.09 9.96 15 3 O -0.56 -12.79 17.88 5.56 0.10 -12.69 15 4 N -0.63 -11.37 3.69 -185.04 -0.68 -12.05 15 5 C 0.05 0.87 8.10 -8.36 -0.07 0.80 15 6 C 0.16 2.92 4.84 -67.67 -0.33 2.59 15 7 N -0.70 -16.96 5.44 -53.09 -0.29 -17.25 15 8 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 15 9 H 0.08 1.90 7.83 -52.49 -0.41 1.49 15 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 15 11 N -0.93 -27.66 13.06 55.49 0.72 -26.94 15 12 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 15 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 16 C 0.08 1.33 8.38 -8.49 -0.07 1.26 15 17 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 18 H 0.08 1.05 7.76 -51.93 -0.40 0.65 15 19 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 20 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 21 H 0.08 1.28 7.96 -51.93 -0.41 0.87 15 22 H 0.09 1.47 8.11 -51.93 -0.42 1.05 15 23 H 0.39 10.54 7.96 -40.82 -0.32 10.21 15 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 25 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 LS Contribution 234.73 15.07 3.54 3.54 Total: -1.00 -32.09 234.73 -5.29 -37.38 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.22 Total: 5.94 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.44 Total: 5.50 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.25 Total: -56.24 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.10 Total: -12.69 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.09 -5.29 -37.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966873.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.290 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds