Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53760 * 87.88426 * 152.97074 * 5 4 2 7 7 N 1.46500 * 114.39313 * 272.67612 * 6 5 4 8 8 C 1.36931 * 120.00194 * 248.58839 * 7 6 5 9 9 H 1.08002 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.38819 * 120.00149 * 180.02562 * 8 7 6 11 11 N 1.31618 * 119.99963 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00121 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47290 * 89.99518 * 12 10 8 14 14 H 1.48498 * 109.47227 * 209.99978 * 12 10 8 15 15 H 1.48505 * 109.47152 * 329.99853 * 12 10 8 16 16 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 17 17 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 18 18 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 19 19 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 20 20 H 1.08995 * 113.46676 * 267.70582 * 5 4 2 21 21 H 1.09003 * 113.46340 * 38.14714 * 5 4 2 22 22 H 1.09000 * 114.26454 * 139.79626 * 6 5 4 23 23 H 0.96999 * 119.99736 * 68.59194 * 7 6 5 24 24 H 0.96992 * 120.00011 * 180.02562 * 11 10 8 25 25 H 1.08990 * 113.47221 * 321.86278 * 16 4 2 26 26 H 1.09005 * 113.46914 * 92.24556 * 16 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1646 -2.8713 -0.6996 7 7 3.1095 -2.7767 -2.1605 8 6 3.2513 -3.9036 -2.9254 9 1 3.4042 -4.8621 -2.4517 10 6 3.1996 -3.8139 -4.3097 11 7 3.0138 -2.6458 -4.8870 12 14 3.3924 -5.3512 -5.3531 13 1 2.0583 -5.9588 -5.5908 14 1 4.0117 -4.9920 -6.6542 15 1 4.2605 -6.3253 -4.6439 16 6 3.5942 -1.5740 -0.0002 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 -0.8900 -0.5138 19 1 -0.3633 0.8900 -0.5138 20 1 1.7665 -3.0226 1.0062 21 1 0.9552 -2.8281 -0.6064 22 1 3.6820 -3.7626 -0.3448 23 1 2.9725 -1.9158 -2.5859 24 1 2.9773 -2.5832 -5.8542 25 1 4.2291 -0.9380 -0.6169 26 1 4.0001 -1.7324 0.9989 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966873.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = -11.172600 kcal Electronic energy + Delta-G solvation = -11104.898061 eV Core-core repulsion = 8991.342799 eV Total energy + Delta-G solvation = -2113.555262 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.19835 -38.91409 -35.59636 -32.73937 -31.33354 -28.67315 -26.71346 -25.70873 -22.13442 -19.71344 -19.38719 -17.89880 -17.04669 -16.62843 -16.46184 -15.47522 -15.32291 -14.35560 -14.00161 -13.71648 -13.38289 -13.07716 -12.88818 -12.79263 -12.64249 -12.10849 -11.85114 -11.83131 -10.99263 -10.80031 -9.65385 -9.08140 -7.95988 -5.27966 1.51345 1.52914 1.61572 1.63697 2.02207 2.55945 3.33438 3.60133 3.80170 3.95642 4.29520 4.38613 4.53416 4.57476 4.63276 4.76460 4.83861 4.91721 5.10943 5.25242 5.55157 6.23980 6.86842 7.14913 7.29624 8.01716 8.25140 9.27423 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.062329 B = 0.010018 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.118075 B = 2794.285904 C = 2927.530804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.520 3.480 3 O -0.616 6.616 4 N -0.643 5.643 5 C 0.076 3.924 6 C 0.142 3.858 7 N -0.717 5.717 8 C -0.244 4.244 9 H 0.094 0.906 10 C -0.078 4.078 11 N -0.975 5.975 12 Si 0.980 3.020 13 H -0.286 1.286 14 H -0.303 1.303 15 H -0.262 1.262 16 C 0.079 3.921 17 H 0.119 0.881 18 H 0.088 0.912 19 H 0.091 0.909 20 H 0.124 0.876 21 H 0.070 0.930 22 H 0.114 0.886 23 H 0.369 0.631 24 H 0.250 0.750 25 H 0.043 0.957 26 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 -3.007 11.308 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.313 3.687 3 O -0.500 6.500 4 N -0.376 5.376 5 C -0.050 4.050 6 C 0.030 3.970 7 N -0.353 5.353 8 C -0.375 4.375 9 H 0.112 0.888 10 C -0.270 4.270 11 N -0.625 5.625 12 Si 0.808 3.192 13 H -0.213 1.213 14 H -0.230 1.230 15 H -0.186 1.186 16 C -0.045 4.045 17 H 0.137 0.863 18 H 0.107 0.893 19 H 0.110 0.890 20 H 0.142 0.858 21 H 0.088 0.912 22 H 0.132 0.868 23 H 0.200 0.800 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.836 -2.479 11.230 12.123 hybrid contribution 0.093 0.090 -1.113 1.120 sum -3.743 -2.389 10.117 11.049 Atomic orbital electron populations 1.21788 0.88133 1.05270 1.06117 1.21212 0.91899 0.81053 0.74518 1.90642 1.72330 1.32489 1.54519 1.49812 1.10278 1.06565 1.70980 1.24241 1.01338 0.77208 1.02165 1.21836 0.95160 0.96591 0.83398 1.42352 1.85069 1.07297 1.00562 1.19802 1.40162 0.88851 0.88728 0.88816 1.25699 1.03298 0.99673 0.98335 1.69866 1.58389 1.25012 1.09203 0.85049 0.77662 0.78800 0.77648 1.21306 1.23011 1.18632 1.23784 0.83835 0.95289 1.01629 0.86271 0.89310 0.89025 0.85843 0.91195 0.86849 0.80032 0.94108 0.93869 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 10.18 71.24 0.73 -3.17 15 2 C 0.52 19.01 8.19 87.66 0.72 19.73 15 3 O -0.62 -28.20 17.88 -3.02 -0.05 -28.25 15 4 N -0.64 -21.81 3.69 -857.74 -3.16 -24.97 15 5 C 0.08 2.12 8.10 83.27 0.67 2.79 15 6 C 0.14 4.89 4.84 45.56 0.22 5.11 15 7 N -0.72 -34.63 5.44 -321.89 -1.75 -36.38 15 8 C -0.24 -12.71 9.97 84.04 0.84 -11.87 15 9 H 0.09 4.44 7.83 -2.91 -0.02 4.42 15 10 C -0.08 -4.35 5.50 84.86 0.47 -3.88 15 11 N -0.97 -59.73 13.06 21.65 0.28 -59.44 15 12 Si 0.98 44.44 29.55 68.60 2.03 46.47 15 13 H -0.29 -12.72 7.11 99.48 0.71 -12.01 15 14 H -0.30 -14.21 7.11 99.48 0.71 -13.51 15 15 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 16 C 0.08 2.59 8.38 83.19 0.70 3.29 15 17 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 18 H 0.09 2.09 7.76 -2.39 -0.02 2.07 15 19 H 0.09 2.27 8.14 -2.38 -0.02 2.26 15 20 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15 21 H 0.07 2.11 7.96 -2.39 -0.02 2.09 15 22 H 0.11 3.35 8.11 -2.39 -0.02 3.34 15 23 H 0.37 20.45 7.96 -92.71 -0.74 19.71 15 24 H 0.25 14.95 8.31 -92.71 -0.77 14.18 15 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 15 26 H 0.12 2.96 8.14 -2.38 -0.02 2.94 15 Total: -1.00 -71.21 234.73 2.12 -69.10 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.44 Total: 21.48 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 4.34 Total: 12.01 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -4.63 Total: -120.79 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -71.21 2.12 -69.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966873.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.925 kcal (2) G-P(sol) polarization free energy of solvation -71.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds