Wall clock time and date at job start Mon Mar 30 2020 02:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34588 * 123.52712 * 2 1 4 4 O 1.21283 * 126.03651 * 1.85779 * 3 2 1 5 5 C 1.51808 * 107.92392 * 181.59381 * 3 2 1 6 6 C 1.54793 * 102.22882 * 14.82288 * 5 3 2 7 7 N 1.36328 * 123.52517 * 179.97438 * 2 1 3 8 8 C 1.46904 * 111.00324 * 283.26333 * 7 2 1 9 9 C 1.50703 * 109.47190 * 179.15227 * 8 7 2 10 10 H 1.07995 * 119.99801 * 354.87007 * 9 8 7 11 11 C 1.37875 * 119.99451 * 174.87162 * 9 8 7 12 12 N 1.31512 * 120.00506 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99657 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46897 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47013 * 119.99766 * 13 11 9 16 16 H 1.48491 * 109.47223 * 240.00045 * 13 11 9 17 17 H 1.09005 * 109.46934 * 5.04965 * 1 2 3 18 18 H 1.09000 * 109.46860 * 125.04347 * 1 2 3 19 19 H 1.08998 * 109.47495 * 245.04568 * 1 2 3 20 20 H 1.09000 * 110.85353 * 133.00868 * 5 3 2 21 21 H 1.09005 * 110.85203 * 256.64238 * 5 3 2 22 22 H 1.08993 * 110.95098 * 94.14975 * 6 5 3 23 23 H 1.08998 * 110.94728 * 217.82002 * 6 5 3 24 24 H 1.09006 * 109.46804 * 299.14772 * 8 7 2 25 25 H 1.08999 * 109.47319 * 59.14695 * 8 7 2 26 26 H 0.97000 * 120.00319 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2084 1.1220 0.0000 4 8 1.7854 2.2582 0.0318 5 6 3.6701 0.7139 -0.0402 6 6 3.5833 -0.7767 -0.4482 7 7 2.2180 -1.1365 0.0005 8 6 2.2465 -1.7486 1.3356 9 6 3.0691 -3.0106 1.2922 10 1 3.4559 -3.3709 0.3505 11 6 3.3278 -3.7051 2.4549 12 7 2.8563 -3.2666 3.6016 13 14 4.3469 -5.2698 2.4011 14 1 4.7539 -5.5474 1.0001 15 1 5.5573 -5.1014 3.2447 16 1 3.5390 -6.4046 2.9153 17 1 -0.3633 1.0237 -0.0905 18 1 -0.3633 -0.5901 -0.8414 19 1 -0.3634 -0.4335 0.9317 20 1 4.2134 1.2902 -0.7891 21 1 4.1300 0.8211 0.9423 22 1 3.6820 -0.8917 -1.5276 23 1 4.3345 -1.3683 0.0750 24 1 2.6895 -1.0505 2.0460 25 1 1.2299 -1.9881 1.6474 26 1 3.0387 -3.7549 4.4196 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260137509.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:17 Heat of formation + Delta-G solvation = 5.771164 kcal Electronic energy + Delta-G solvation = -11398.258800 eV Core-core repulsion = 9285.438275 eV Total energy + Delta-G solvation = -2112.820526 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.32458 -36.76883 -33.23345 -32.31047 -30.05778 -26.87101 -25.79892 -23.33092 -21.29205 -19.26898 -16.53325 -16.21146 -16.12883 -15.02010 -14.56524 -13.76850 -13.47666 -13.03769 -12.65774 -12.28201 -12.00468 -11.85702 -11.81459 -11.00377 -10.90612 -10.50813 -10.22039 -9.61765 -9.50862 -8.93748 -8.52801 -7.31551 -6.20489 -4.24593 2.95091 3.21900 3.26604 3.31219 3.37090 4.31101 4.69521 5.13196 5.16139 5.28890 5.48484 5.75804 5.86779 6.05491 6.08729 6.28406 6.47539 6.75711 7.06083 7.23192 7.63351 7.78519 8.02497 8.40638 8.81139 8.85075 9.40683 10.90601 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.065930 B = 0.011376 C = 0.010756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.590323 B = 2460.704409 C = 2602.581494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.467 5.467 3 C 0.495 3.505 4 O -0.551 6.551 5 C -0.185 4.185 6 C 0.038 3.962 7 N -0.299 5.299 8 C 0.164 3.836 9 C -0.517 4.517 10 H 0.069 0.931 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.903 3.097 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.283 1.283 17 H 0.079 0.921 18 H 0.067 0.933 19 H 0.060 0.940 20 H 0.101 0.899 21 H 0.103 0.897 22 H 0.083 0.917 23 H 0.111 0.889 24 H 0.004 0.996 25 H 0.035 0.965 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 2.789 -5.865 6.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.286 5.286 3 C 0.282 3.718 4 O -0.428 6.428 5 C -0.227 4.227 6 C -0.090 4.090 7 N -0.116 5.116 8 C 0.039 3.961 9 C -0.557 4.557 10 H 0.087 0.913 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.730 3.270 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.209 1.209 17 H 0.098 0.902 18 H 0.086 0.914 19 H 0.079 0.921 20 H 0.119 0.881 21 H 0.121 0.879 22 H 0.101 0.899 23 H 0.129 0.871 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.183 2.993 -5.992 6.701 hybrid contribution 0.896 -0.458 0.848 1.316 sum 0.713 2.535 -5.145 5.780 Atomic orbital electron populations 1.21466 0.76714 1.02615 1.02263 1.48026 1.06094 1.03108 1.71341 1.21568 0.89668 0.84761 0.75794 1.90647 1.78907 1.20559 1.52727 1.22913 0.95248 0.99704 1.04799 1.23510 0.91498 0.92570 1.01431 1.65096 1.09014 1.07579 1.29876 1.20423 0.98384 0.94457 0.82861 1.21023 1.32867 1.07686 0.94086 0.91256 1.24997 0.96008 0.98122 0.95168 1.69973 1.45000 1.39654 0.98439 0.86359 0.79706 0.82601 0.78307 1.19424 1.20929 1.20852 0.90221 0.91408 0.92122 0.88053 0.87912 0.89905 0.87107 0.97857 0.94698 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.86 11.08 59.85 0.66 2.52 15 2 N -0.47 -9.33 2.99 -66.71 -0.20 -9.53 15 3 C 0.50 9.98 8.16 -10.52 -0.09 9.89 15 4 O -0.55 -12.27 17.38 5.55 0.10 -12.18 15 5 C -0.19 -3.15 7.05 -26.39 -0.19 -3.34 15 6 C 0.04 0.68 6.75 -2.19 -0.01 0.66 15 7 N -0.30 -6.34 5.42 -113.06 -0.61 -6.95 15 8 C 0.16 4.11 4.91 -4.97 -0.02 4.09 15 9 C -0.52 -13.59 7.94 -34.44 -0.27 -13.86 15 10 H 0.07 1.77 7.47 -52.49 -0.39 1.37 15 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 12 N -0.89 -25.45 13.29 55.43 0.74 -24.72 15 13 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 15 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 17 H 0.08 1.24 7.54 -51.93 -0.39 0.85 15 18 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 19 H 0.06 1.01 7.91 -51.93 -0.41 0.60 15 20 H 0.10 1.43 8.14 -51.93 -0.42 1.01 15 21 H 0.10 1.75 8.14 -51.93 -0.42 1.33 15 22 H 0.08 1.30 8.14 -51.93 -0.42 0.87 15 23 H 0.11 2.09 6.61 -51.93 -0.34 1.75 15 24 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 15 25 H 0.03 0.94 7.84 -51.93 -0.41 0.53 15 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 LS Contribution 227.68 15.07 3.43 3.43 Total: -1.00 -30.45 227.68 -4.78 -35.23 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -3.19 Total: -2.19 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -0.02 Total: 1.48 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.08 Total: -41.20 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.10 Total: -12.18 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.45 -4.78 -35.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137509.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.006 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds