Wall clock time and date at job start Mon Mar 30 2020 02:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34588 * 123.52712 * 2 1 4 4 O 1.21283 * 126.03651 * 1.85779 * 3 2 1 5 5 C 1.51808 * 107.92392 * 181.59381 * 3 2 1 6 6 C 1.54793 * 102.22882 * 14.82288 * 5 3 2 7 7 N 1.36328 * 123.52517 * 179.97438 * 2 1 3 8 8 C 1.46904 * 111.00324 * 283.26333 * 7 2 1 9 9 C 1.50703 * 109.47190 * 179.15227 * 8 7 2 10 10 H 1.07995 * 119.99801 * 354.87007 * 9 8 7 11 11 C 1.37875 * 119.99451 * 174.87162 * 9 8 7 12 12 N 1.31512 * 120.00506 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99657 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46897 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47013 * 119.99766 * 13 11 9 16 16 H 1.48491 * 109.47223 * 240.00045 * 13 11 9 17 17 H 1.09005 * 109.46934 * 5.04965 * 1 2 3 18 18 H 1.09000 * 109.46860 * 125.04347 * 1 2 3 19 19 H 1.08998 * 109.47495 * 245.04568 * 1 2 3 20 20 H 1.09000 * 110.85353 * 133.00868 * 5 3 2 21 21 H 1.09005 * 110.85203 * 256.64238 * 5 3 2 22 22 H 1.08993 * 110.95098 * 94.14975 * 6 5 3 23 23 H 1.08998 * 110.94728 * 217.82002 * 6 5 3 24 24 H 1.09006 * 109.46804 * 299.14772 * 8 7 2 25 25 H 1.08999 * 109.47319 * 59.14695 * 8 7 2 26 26 H 0.97000 * 120.00319 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2084 1.1220 0.0000 4 8 1.7854 2.2582 0.0318 5 6 3.6701 0.7139 -0.0402 6 6 3.5833 -0.7767 -0.4482 7 7 2.2180 -1.1365 0.0005 8 6 2.2465 -1.7486 1.3356 9 6 3.0691 -3.0106 1.2922 10 1 3.4559 -3.3709 0.3505 11 6 3.3278 -3.7051 2.4549 12 7 2.8563 -3.2666 3.6016 13 14 4.3469 -5.2698 2.4011 14 1 4.7539 -5.5474 1.0001 15 1 5.5573 -5.1014 3.2447 16 1 3.5390 -6.4046 2.9153 17 1 -0.3633 1.0237 -0.0905 18 1 -0.3633 -0.5901 -0.8414 19 1 -0.3634 -0.4335 0.9317 20 1 4.2134 1.2902 -0.7891 21 1 4.1300 0.8211 0.9423 22 1 3.6820 -0.8917 -1.5276 23 1 4.3345 -1.3683 0.0750 24 1 2.6895 -1.0505 2.0460 25 1 1.2299 -1.9881 1.6474 26 1 3.0387 -3.7549 4.4196 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260137509.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:17 Heat of formation + Delta-G solvation = -15.453027 kcal Electronic energy + Delta-G solvation = -11399.179150 eV Core-core repulsion = 9285.438275 eV Total energy + Delta-G solvation = -2113.740876 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.91845 -38.44540 -35.19134 -33.84166 -31.83998 -28.54366 -27.44044 -25.11540 -22.97471 -20.84958 -18.49698 -17.85461 -17.76672 -16.60437 -16.41752 -15.36439 -15.05060 -14.72685 -14.27122 -14.09119 -13.65072 -13.31529 -13.27159 -12.76159 -12.73404 -12.13354 -12.02184 -11.45248 -11.23224 -10.74049 -10.44197 -8.99934 -8.25498 -6.37127 1.36059 1.45387 1.46952 1.59829 1.79852 2.42425 3.09724 3.20080 3.60588 3.84297 4.13972 4.40629 4.51685 4.68318 4.76224 4.88243 5.00665 5.04267 5.13173 5.32784 5.64395 5.96267 6.02166 6.76858 6.80083 7.19233 7.33515 8.86851 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.065930 B = 0.011376 C = 0.010756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.590323 B = 2460.704409 C = 2602.581494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.473 5.473 3 C 0.486 3.514 4 O -0.576 6.576 5 C -0.175 4.175 6 C 0.037 3.963 7 N -0.301 5.301 8 C 0.181 3.819 9 C -0.525 4.525 10 H 0.079 0.921 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.975 3.025 14 H -0.255 1.255 15 H -0.280 1.280 16 H -0.283 1.283 17 H 0.090 0.910 18 H 0.089 0.911 19 H 0.053 0.947 20 H 0.138 0.862 21 H 0.100 0.900 22 H 0.116 0.884 23 H 0.102 0.898 24 H -0.028 1.028 25 H 0.007 0.993 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 2.192 -7.207 7.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.292 5.292 3 C 0.274 3.726 4 O -0.455 6.455 5 C -0.216 4.216 6 C -0.090 4.090 7 N -0.117 5.117 8 C 0.054 3.946 9 C -0.564 4.564 10 H 0.097 0.903 11 C -0.193 4.193 12 N -0.573 5.573 13 Si 0.799 3.201 14 H -0.179 1.179 15 H -0.206 1.206 16 H -0.209 1.209 17 H 0.109 0.891 18 H 0.107 0.893 19 H 0.072 0.928 20 H 0.156 0.844 21 H 0.118 0.882 22 H 0.134 0.866 23 H 0.120 0.880 24 H -0.010 1.010 25 H 0.025 0.975 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.831 2.395 -7.360 7.784 hybrid contribution 0.532 -0.220 1.245 1.372 sum 1.363 2.175 -6.115 6.631 Atomic orbital electron populations 1.21672 0.75363 1.03713 1.02865 1.48274 1.07172 1.02781 1.70959 1.22054 0.91026 0.84365 0.75116 1.90630 1.79661 1.21365 1.53855 1.22955 0.93499 0.99308 1.05858 1.23659 0.89314 0.92931 1.03111 1.65090 1.11166 1.08613 1.26864 1.20083 0.96195 0.94051 0.84274 1.21333 1.32601 1.07949 0.94482 0.90325 1.25939 0.97139 1.01533 0.94701 1.70107 1.46605 1.41351 0.99265 0.85239 0.77827 0.78045 0.78951 1.17863 1.20562 1.20869 0.89140 0.89285 0.92778 0.84375 0.88190 0.86644 0.87964 1.01030 0.97525 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.44 11.08 127.77 1.42 4.85 15 2 N -0.47 -18.50 2.99 -483.45 -1.45 -19.95 15 3 C 0.49 19.00 8.16 88.04 0.72 19.72 15 4 O -0.58 -25.10 17.38 -3.04 -0.05 -25.15 15 5 C -0.18 -5.58 7.05 30.81 0.22 -5.37 15 6 C 0.04 1.24 6.75 86.67 0.58 1.83 15 7 N -0.30 -12.46 5.42 -511.62 -2.77 -15.24 15 8 C 0.18 9.15 4.91 85.56 0.42 9.57 15 9 C -0.52 -27.33 7.94 25.60 0.20 -27.13 15 10 H 0.08 3.88 7.47 -2.91 -0.02 3.85 15 11 C 0.01 0.31 5.46 84.65 0.46 0.78 15 12 N -0.93 -53.91 13.29 21.45 0.28 -53.63 15 13 Si 0.98 41.29 29.54 68.60 2.03 43.32 15 14 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 15 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 17 H 0.09 2.74 7.54 -2.38 -0.02 2.72 15 18 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 19 H 0.05 1.82 7.91 -2.39 -0.02 1.80 15 20 H 0.14 3.38 8.14 -2.39 -0.02 3.36 15 21 H 0.10 3.28 8.14 -2.38 -0.02 3.26 15 22 H 0.12 3.18 8.14 -2.39 -0.02 3.16 15 23 H 0.10 3.67 6.61 -2.39 -0.02 3.65 15 24 H -0.03 -1.58 8.14 -2.38 -0.02 -1.60 15 25 H 0.01 0.37 7.84 -2.39 -0.02 0.35 15 26 H 0.27 14.44 8.31 -92.71 -0.77 13.67 15 Total: -1.00 -64.42 227.68 3.22 -61.20 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.16 Total: 5.19 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 4.02 Total: 4.25 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -3.94 Total: -88.81 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -64.42 3.22 -61.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137509.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.750 kcal (2) G-P(sol) polarization free energy of solvation -64.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds