Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48496 * 109.47196 * 269.99493 * 3 2 1 5 5 H 1.48503 * 109.47201 * 30.00135 * 3 2 1 6 6 H 1.48501 * 109.46986 * 149.99754 * 3 2 1 7 7 C 1.37880 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46833 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47097 * 55.00003 * 10 9 7 12 12 C 1.52999 * 109.47628 * 295.00207 * 10 9 7 13 13 C 1.52997 * 109.47317 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.47086 * 300.00656 * 15 14 13 18 18 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 19 19 H 0.97003 * 120.00442 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47546 * 59.99838 * 9 7 2 21 21 H 1.08998 * 109.47173 * 299.99530 * 9 7 2 22 22 H 1.08996 * 109.46929 * 59.99225 * 12 10 9 23 23 H 1.09002 * 109.46716 * 300.00030 * 12 10 9 24 24 H 1.09002 * 109.47153 * 299.99641 * 13 12 10 25 25 H 1.09001 * 109.46832 * 179.97438 * 13 12 10 26 26 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 27 27 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 28 28 H 0.96704 * 113.99412 * 299.99605 * 17 15 14 29 29 H 1.09002 * 109.47153 * 60.00231 * 18 15 14 30 30 H 1.09001 * 109.47289 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 6 3.0400 -3.6536 -1.3067 13 6 4.0338 -4.8169 -1.3069 14 6 3.2724 -6.1381 -1.1815 15 6 2.4776 -6.1466 0.1258 16 1 1.9356 -7.0880 0.2154 17 8 3.3746 -6.0070 1.2295 18 6 1.4839 -4.9833 0.1260 19 1 -0.4851 0.8400 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 3.5820 -2.7122 -1.3963 23 1 2.3559 -3.7605 -2.1486 24 1 4.7180 -4.7105 -0.4651 25 1 4.5997 -4.8111 -2.2385 26 1 2.5883 -6.2445 -2.0233 27 1 3.9805 -6.9668 -1.1812 28 1 4.0340 -6.7116 1.2919 29 1 0.7997 -5.0898 -0.7158 30 1 0.9179 -4.9891 1.0576 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260196828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = -86.870957 kcal Electronic energy + Delta-G solvation = -11586.567179 eV Core-core repulsion = 9573.269733 eV Total energy + Delta-G solvation = -2013.297446 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.73337 -35.11448 -32.90205 -31.00175 -29.40191 -26.61250 -23.17213 -21.88331 -20.27219 -18.98424 -16.45418 -16.16280 -15.21421 -14.37416 -14.23021 -13.59373 -13.10221 -12.39134 -12.09230 -11.81289 -11.70467 -11.30177 -10.92981 -10.69003 -10.58998 -10.40973 -10.23107 -10.01471 -9.47667 -9.33661 -8.87792 -8.73584 -8.26091 -5.91331 -3.91968 3.36669 3.42740 3.46758 4.52952 4.59661 5.13935 5.16991 5.30363 5.44343 5.75255 5.85693 5.90227 6.00910 6.14396 6.21720 6.28708 6.48924 6.60276 6.77624 6.85704 7.18401 7.26145 7.32433 7.78896 7.94269 7.96932 8.10669 8.54804 9.14693 9.70934 11.20212 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.064913 B = 0.010164 C = 0.009654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.240522 B = 2754.242067 C = 2899.642150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.075 4.075 11 H 0.064 0.936 12 C -0.104 4.104 13 C -0.116 4.116 14 C -0.148 4.148 15 C 0.105 3.895 16 H 0.043 0.957 17 O -0.558 6.558 18 C -0.109 4.109 19 H 0.259 0.741 20 H 0.013 0.987 21 H 0.014 0.986 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.365 0.635 29 H 0.067 0.933 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 -11.257 -1.771 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.094 4.094 11 H 0.082 0.918 12 C -0.141 4.141 13 C -0.154 4.154 14 C -0.186 4.186 15 C 0.046 3.954 16 H 0.061 0.939 17 O -0.362 6.362 18 C -0.146 4.146 19 H 0.068 0.932 20 H 0.032 0.968 21 H 0.032 0.968 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.211 0.789 29 H 0.086 0.914 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.197 -10.594 -1.667 11.917 hybrid contribution 0.702 0.416 -0.196 0.839 sum 5.899 -10.178 -1.863 11.911 Atomic orbital electron populations 1.69968 1.06017 1.26355 1.51448 1.25026 0.94810 0.99121 0.95663 0.86648 0.79922 0.83777 0.77984 1.20797 1.21335 1.19912 1.21278 0.92992 0.91008 1.49624 0.92640 1.19159 0.93755 0.91389 0.96905 1.21098 0.97815 0.93705 0.96755 0.91763 1.21498 0.97273 0.97228 0.98129 1.21507 0.98451 0.94764 1.00651 1.22221 0.99549 0.98219 0.98623 1.21857 0.90407 0.97935 0.85151 0.93945 1.86637 1.47581 1.52500 1.49516 1.21670 0.96535 0.94713 1.01681 0.93180 0.96827 0.96770 0.91276 0.93188 0.91912 0.93233 0.91477 0.92878 0.78942 0.91415 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.76 8.41 -34.44 -0.29 -15.05 16 8 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 9 C 0.02 0.66 4.45 -27.88 -0.12 0.54 16 10 C -0.08 -1.63 1.99 -90.62 -0.18 -1.81 16 11 H 0.06 1.50 7.68 -51.93 -0.40 1.10 16 12 C -0.10 -2.03 5.01 -26.73 -0.13 -2.16 16 13 C -0.12 -1.82 5.78 -26.73 -0.15 -1.98 16 14 C -0.15 -2.01 5.64 -26.73 -0.15 -2.17 16 15 C 0.11 1.57 3.77 -26.73 -0.10 1.47 16 16 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 17 O -0.56 -8.54 11.97 -35.23 -0.42 -8.96 16 18 C -0.11 -1.99 4.94 -26.73 -0.13 -2.12 16 19 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 20 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 21 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.07 1.47 6.95 -51.93 -0.36 1.10 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.37 3.77 9.08 45.56 0.41 4.18 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 241.61 15.07 3.64 3.64 Total: -1.00 -31.48 241.61 -6.48 -37.97 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.05 Total: -1.15 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -1.36 Total: -21.78 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.88 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.42 Total: -8.96 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.48 -6.48 -37.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.903 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds