Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48496 * 109.47196 * 269.99493 * 3 2 1 5 5 H 1.48503 * 109.47201 * 30.00135 * 3 2 1 6 6 H 1.48501 * 109.46986 * 149.99754 * 3 2 1 7 7 C 1.37880 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46833 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47097 * 55.00003 * 10 9 7 12 12 C 1.52999 * 109.47628 * 295.00207 * 10 9 7 13 13 C 1.52997 * 109.47317 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.47086 * 300.00656 * 15 14 13 18 18 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 19 19 H 0.97003 * 120.00442 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47546 * 59.99838 * 9 7 2 21 21 H 1.08998 * 109.47173 * 299.99530 * 9 7 2 22 22 H 1.08996 * 109.46929 * 59.99225 * 12 10 9 23 23 H 1.09002 * 109.46716 * 300.00030 * 12 10 9 24 24 H 1.09002 * 109.47153 * 299.99641 * 13 12 10 25 25 H 1.09001 * 109.46832 * 179.97438 * 13 12 10 26 26 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 27 27 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 28 28 H 0.96704 * 113.99412 * 299.99605 * 17 15 14 29 29 H 1.09002 * 109.47153 * 60.00231 * 18 15 14 30 30 H 1.09001 * 109.47289 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 6 3.0400 -3.6536 -1.3067 13 6 4.0338 -4.8169 -1.3069 14 6 3.2724 -6.1381 -1.1815 15 6 2.4776 -6.1466 0.1258 16 1 1.9356 -7.0880 0.2154 17 8 3.3746 -6.0070 1.2295 18 6 1.4839 -4.9833 0.1260 19 1 -0.4851 0.8400 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 3.5820 -2.7122 -1.3963 23 1 2.3559 -3.7605 -2.1486 24 1 4.7180 -4.7105 -0.4651 25 1 4.5997 -4.8111 -2.2385 26 1 2.5883 -6.2445 -2.0233 27 1 3.9805 -6.9668 -1.1812 28 1 4.0340 -6.7116 1.2919 29 1 0.7997 -5.0898 -0.7158 30 1 0.9179 -4.9891 1.0576 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260196828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = -108.656168 kcal Electronic energy + Delta-G solvation = -11587.511857 eV Core-core repulsion = 9573.269733 eV Total energy + Delta-G solvation = -2014.242124 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.08066 -36.60403 -34.86739 -32.69892 -30.80754 -28.51906 -25.12224 -23.25940 -21.83171 -20.50117 -18.45352 -17.59274 -16.72034 -16.24346 -15.52838 -15.11933 -14.73505 -14.21239 -13.73537 -13.37428 -13.24116 -12.99719 -12.62959 -12.49884 -12.28485 -12.06685 -11.76143 -11.59653 -11.19267 -11.13836 -10.59272 -10.50684 -10.36704 -8.18327 -6.27945 1.37720 1.39578 1.50721 2.41014 3.14060 3.51532 3.92052 3.96786 4.09038 4.39520 4.44930 4.62388 4.70431 4.74828 4.81144 5.04213 5.15397 5.19215 5.22524 5.32910 5.46440 5.50619 5.54941 5.64363 5.85119 5.93118 6.30367 6.87596 7.08199 7.40040 8.93729 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.064913 B = 0.010164 C = 0.009654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.240522 B = 2754.242067 C = 2899.642150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.066 4.066 11 H 0.043 0.957 12 C -0.102 4.102 13 C -0.110 4.110 14 C -0.142 4.142 15 C 0.110 3.890 16 H 0.073 0.927 17 O -0.582 6.582 18 C -0.111 4.111 19 H 0.262 0.738 20 H -0.009 1.009 21 H -0.019 1.019 22 H 0.043 0.957 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.389 0.611 29 H 0.073 0.927 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.300 -12.339 -2.395 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.085 4.085 11 H 0.062 0.938 12 C -0.139 4.139 13 C -0.147 4.147 14 C -0.180 4.180 15 C 0.051 3.949 16 H 0.091 0.909 17 O -0.390 6.390 18 C -0.149 4.149 19 H 0.071 0.929 20 H 0.009 0.991 21 H -0.001 1.001 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.238 0.762 29 H 0.092 0.908 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.798 -11.702 -2.291 13.726 hybrid contribution 0.173 0.752 0.027 0.772 sum 6.971 -10.950 -2.264 13.176 Atomic orbital electron populations 1.70104 1.07764 1.27583 1.52183 1.25987 0.95776 1.03291 0.95029 0.85486 0.78646 0.78630 0.78545 1.19600 1.20702 1.18952 1.21643 0.93278 0.92247 1.49655 0.92484 1.19078 0.94157 0.93452 0.94092 1.20896 0.96626 0.93629 0.97349 0.93798 1.21425 0.97745 0.98240 0.96502 1.21441 0.97524 0.94152 1.01623 1.22204 1.00023 0.97896 0.97875 1.21780 0.90105 0.97007 0.85971 0.90943 1.86583 1.48470 1.54204 1.49697 1.21642 0.97410 0.94595 1.01206 0.92896 0.99104 1.00087 0.93785 0.93355 0.92363 0.91079 0.90667 0.89185 0.76233 0.90807 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.99 13.29 21.45 0.28 -58.70 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 3 Si 0.96 45.94 29.54 68.60 2.03 47.96 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.53 -31.55 8.41 25.60 0.22 -31.34 16 8 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 9 C 0.03 1.64 4.45 29.85 0.13 1.77 16 10 C -0.07 -2.94 1.99 -10.79 -0.02 -2.97 16 11 H 0.04 2.10 7.68 -2.39 -0.02 2.08 16 12 C -0.10 -3.95 5.01 30.59 0.15 -3.79 16 13 C -0.11 -3.17 5.78 30.59 0.18 -2.99 16 14 C -0.14 -3.30 5.64 30.60 0.17 -3.12 16 15 C 0.11 2.96 3.77 30.59 0.12 3.08 16 16 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 17 O -0.58 -16.37 11.97 -148.98 -1.78 -18.15 16 18 C -0.11 -4.04 4.94 30.60 0.15 -3.89 16 19 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 20 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 21 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 22 H 0.04 1.89 6.95 -2.39 -0.02 1.87 16 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.06 1.74 7.68 -2.39 -0.02 1.72 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.39 6.66 9.08 -74.05 -0.67 5.99 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.49 241.61 2.51 -66.97 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 0.43 Total: 4.94 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 1.56 Total: -43.02 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.28 Total: -58.70 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -1.78 Total: -18.15 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -69.49 2.51 -66.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.685 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds