Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46744 * 55.00219 * 10 9 7 12 12 C 1.52995 * 109.47234 * 295.00598 * 10 9 7 13 13 C 1.52996 * 109.47236 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47461 * 59.99859 * 13 12 10 15 15 C 1.53003 * 109.46609 * 300.00382 * 14 13 12 16 16 H 1.08996 * 109.47370 * 299.99482 * 15 14 13 17 17 O 1.42902 * 109.46894 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47102 * 175.00464 * 10 9 7 19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 21 21 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 22 22 H 1.09006 * 109.47389 * 299.99793 * 12 10 9 23 23 H 1.09003 * 109.47743 * 59.99455 * 12 10 9 24 24 H 1.09000 * 109.47315 * 179.97438 * 13 12 10 25 25 H 1.08997 * 109.46920 * 299.99564 * 13 12 10 26 26 H 1.09001 * 109.47049 * 59.99481 * 14 13 12 27 27 H 1.08992 * 109.47282 * 180.02562 * 14 13 12 28 28 H 0.96703 * 114.00106 * 59.99639 * 17 15 14 29 29 H 1.09006 * 109.46822 * 299.99923 * 18 10 9 30 30 H 1.08997 * 109.47474 * 60.00037 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9295 -3.5551 0.8414 12 6 3.0403 -3.6535 -1.3078 13 6 4.0341 -4.8167 -1.3080 14 6 3.2729 -6.1380 -1.1827 15 6 2.4780 -6.1465 0.1246 16 1 3.1620 -6.0401 0.9665 17 8 1.7665 -7.3803 0.2414 18 6 1.4846 -4.9835 0.1251 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.3562 -3.7603 -2.1497 23 1 3.5823 -2.7120 -1.3974 24 1 4.6001 -4.8109 -2.2396 25 1 4.7182 -4.7103 -0.4662 26 1 2.5887 -6.2443 -2.0246 27 1 3.9809 -6.9666 -1.1825 28 1 2.3346 -8.1628 0.2477 29 1 0.9184 -4.9896 1.0565 30 1 0.8006 -5.0904 -0.7167 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260196829.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = -110.981530 kcal Electronic energy + Delta-G solvation = -11459.939500 eV Core-core repulsion = 9445.596541 eV Total energy + Delta-G solvation = -2014.342959 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.00458 -36.96344 -34.99730 -32.76705 -30.61065 -28.48417 -25.14414 -23.18063 -21.95623 -20.61635 -18.43889 -17.95278 -16.62440 -16.15152 -15.40601 -15.24623 -14.84956 -14.24003 -13.95025 -13.44798 -13.36703 -12.96336 -12.60391 -12.50436 -12.29228 -11.87819 -11.81146 -11.56638 -11.34867 -11.01791 -10.77422 -10.60111 -10.48520 -8.18011 -6.28046 1.40014 1.40121 1.53437 2.41492 3.15128 3.33938 3.82967 3.91085 4.19120 4.34433 4.36611 4.55768 4.64387 4.67351 4.72878 5.02571 5.12340 5.18969 5.21810 5.29052 5.42230 5.44864 5.52650 5.59127 5.81368 5.88086 6.27638 6.88372 6.97949 7.40545 8.94526 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.070110 B = 0.009613 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.279389 B = 2912.151872 C = 3184.056023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.030 3.970 10 C -0.068 4.068 11 H 0.058 0.942 12 C -0.105 4.105 13 C -0.111 4.111 14 C -0.140 4.140 15 C 0.110 3.890 16 H 0.063 0.937 17 O -0.586 6.586 18 C -0.106 4.106 19 H 0.262 0.738 20 H -0.013 1.013 21 H -0.016 1.016 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.393 0.607 29 H 0.047 0.953 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -11.070 -1.552 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.566 4.566 8 H 0.083 0.917 9 C -0.007 4.007 10 C -0.087 4.087 11 H 0.077 0.923 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.178 4.178 15 C 0.052 3.948 16 H 0.081 0.919 17 O -0.395 6.395 18 C -0.144 4.144 19 H 0.071 0.929 20 H 0.005 0.995 21 H 0.002 0.998 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.243 0.757 29 H 0.066 0.934 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.262 -10.567 -1.544 13.502 hybrid contribution 0.141 0.805 0.047 0.818 sum 8.403 -9.763 -1.498 12.968 Atomic orbital electron populations 1.70123 1.07919 1.27542 1.52235 1.26017 0.95731 1.03450 0.95069 0.85408 0.79228 0.78851 0.77621 1.18266 1.20560 1.20589 1.21679 0.93546 0.91849 1.49511 0.91700 1.19044 0.94116 0.93316 0.94234 1.20981 0.96842 0.92831 0.98039 0.92314 1.21475 0.97717 0.98696 0.96346 1.21495 0.97357 0.93254 1.02727 1.22190 0.99376 0.98642 0.97595 1.21749 0.92484 0.83419 0.97168 0.91877 1.86496 1.39454 1.16623 1.96918 1.21512 0.98068 0.93789 1.00983 0.92948 0.99503 0.99793 0.93825 0.92648 0.90367 0.91254 0.92233 0.89020 0.75684 0.93388 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.45 13.29 21.45 0.28 -58.17 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.53 -30.21 8.41 25.60 0.22 -30.00 16 8 H 0.06 3.53 7.06 -2.91 -0.02 3.51 16 9 C 0.03 1.63 4.45 29.85 0.13 1.76 16 10 C -0.07 -2.86 2.14 -10.79 -0.02 -2.89 16 11 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 12 C -0.10 -3.86 5.01 30.59 0.15 -3.70 16 13 C -0.11 -2.94 5.92 30.59 0.18 -2.76 16 14 C -0.14 -3.37 5.55 30.60 0.17 -3.21 16 15 C 0.11 3.12 3.47 30.58 0.11 3.23 16 16 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 17 O -0.59 -15.61 13.32 -148.98 -1.98 -17.60 16 18 C -0.11 -3.97 4.85 30.57 0.15 -3.82 16 19 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 20 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 21 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 22 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.05 2.20 6.95 -2.39 -0.02 2.18 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.39 6.07 9.08 -74.05 -0.67 5.40 16 29 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.33 243.67 2.30 -65.03 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.43 Total: 5.18 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 1.55 Total: -41.25 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.28 Total: -58.17 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -1.98 Total: -17.60 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.33 2.30 -65.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196829.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.956 kcal (2) G-P(sol) polarization free energy of solvation -67.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds