Wall clock time and date at job start Mon Mar 30 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.05647 * 2 1 4 4 C 1.54269 * 110.03414 * 238.58245 * 2 1 3 5 5 H 1.08998 * 110.48673 * 145.51198 * 4 2 1 6 6 O 1.42902 * 110.48454 * 23.00995 * 4 2 1 7 7 C 1.54882 * 104.19831 * 264.32705 * 4 2 1 8 8 C 1.54888 * 102.74855 * 322.05471 * 7 4 2 9 9 C 1.53873 * 110.03228 * 121.41729 * 2 1 3 10 10 H 1.09002 * 110.03070 * 0.02562 * 9 2 1 11 11 C 1.50702 * 110.03212 * 238.61686 * 9 2 1 12 12 H 1.07997 * 120.00119 * 0.69732 * 11 9 2 13 13 C 1.37875 * 119.99864 * 180.68618 * 11 9 2 14 14 N 1.31517 * 120.00173 * 180.02562 * 13 11 9 15 15 Si 1.86803 * 119.99998 * 0.02562 * 13 11 9 16 16 H 1.48498 * 109.47068 * 89.99901 * 15 13 11 17 17 H 1.48505 * 109.46961 * 209.99692 * 15 13 11 18 18 H 1.48496 * 109.46947 * 329.99659 * 15 13 11 19 19 H 1.08994 * 109.47309 * 298.58130 * 1 2 3 20 20 H 1.09001 * 109.46733 * 58.58603 * 1 2 3 21 21 H 1.08996 * 109.46830 * 178.57891 * 1 2 3 22 22 H 1.09001 * 109.47300 * 181.41484 * 3 2 1 23 23 H 1.09003 * 109.47173 * 301.41779 * 3 2 1 24 24 H 1.09000 * 109.46923 * 61.41483 * 3 2 1 25 25 H 0.96701 * 113.99875 * 179.97438 * 6 4 2 26 26 H 1.08998 * 110.75605 * 80.36842 * 7 4 2 27 27 H 1.09002 * 110.75549 * 203.56377 * 7 4 2 28 28 H 1.09001 * 110.49097 * 279.26569 * 8 7 4 29 29 H 1.08999 * 110.48858 * 156.61808 * 8 7 4 30 30 H 0.96998 * 120.00151 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2369 5 1 2.9798 -0.2986 -1.5980 6 8 1.0722 -0.7739 -2.2708 7 6 2.3281 -2.1901 -0.7192 8 6 2.8875 -1.9407 0.7034 9 6 2.0571 -0.7536 1.2337 10 1 1.2228 -1.1197 1.8322 11 6 2.9266 0.1568 2.0621 12 1 3.0848 1.1798 1.7542 13 6 3.5200 -0.3163 3.2132 14 7 4.2784 0.4782 3.9365 15 14 3.2466 -2.0859 3.7456 16 1 4.2947 -2.9506 3.1463 17 1 3.3190 -2.1742 5.2262 18 1 1.9090 -2.5396 3.2874 19 1 -0.3633 0.4916 0.9024 20 1 -0.3633 0.5357 -0.8771 21 1 -0.3633 -1.0273 -0.0255 22 1 3.1443 1.4262 -0.0254 23 1 1.6761 1.9623 -0.8770 24 1 1.7174 1.9471 0.9024 25 1 1.3517 -1.2362 -3.0728 26 1 1.4031 -2.7651 -0.6752 27 1 3.0652 -2.6942 -1.3442 28 1 3.9440 -1.6767 0.6571 29 1 2.7401 -2.8197 1.3309 30 1 4.6962 0.1453 4.7461 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260372677.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:58 Heat of formation + Delta-G solvation = -82.890838 kcal Electronic energy + Delta-G solvation = -12064.061472 eV Core-core repulsion = 10050.936617 eV Total energy + Delta-G solvation = -2013.124855 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.44343 -36.53514 -34.29304 -33.04655 -29.96699 -28.20943 -25.58056 -24.56534 -21.88428 -19.45064 -18.47727 -18.05031 -16.54875 -15.84270 -15.39365 -15.18908 -14.85708 -13.90014 -13.85674 -13.68878 -13.10935 -12.95271 -12.87896 -12.31157 -12.16391 -11.84851 -11.67304 -11.48081 -11.10288 -10.90790 -10.73670 -10.63098 -10.53762 -8.20704 -6.21879 1.32074 1.36229 1.45018 2.38165 3.12101 3.48596 3.79838 3.88128 4.19154 4.48489 4.52478 4.63649 4.71833 4.80836 4.86457 4.98477 5.01903 5.10021 5.20839 5.28947 5.36224 5.48884 5.54810 5.65990 5.74624 5.84496 6.44585 6.86426 7.07381 7.42873 8.94026 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.050721 B = 0.016231 C = 0.014144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.903583 B = 1724.706516 C = 1979.215302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.055 4.055 3 C -0.110 4.110 4 C 0.116 3.884 5 H 0.060 0.940 6 O -0.568 6.568 7 C -0.142 4.142 8 C -0.133 4.133 9 C 0.012 3.988 10 H 0.021 0.979 11 C -0.513 4.513 12 H 0.068 0.932 13 C 0.012 3.988 14 N -0.953 5.953 15 Si 0.930 3.070 16 H -0.267 1.267 17 H -0.300 1.300 18 H -0.252 1.252 19 H 0.038 0.962 20 H 0.061 0.939 21 H 0.050 0.950 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.389 0.611 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -5.646 -10.768 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.167 4.167 4 C 0.057 3.943 5 H 0.078 0.922 6 O -0.376 6.376 7 C -0.179 4.179 8 C -0.171 4.171 9 C -0.006 4.006 10 H 0.039 0.961 11 C -0.551 4.551 12 H 0.086 0.914 13 C -0.184 4.184 14 N -0.595 5.595 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.228 1.228 18 H -0.176 1.176 19 H 0.057 0.943 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.238 0.762 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.180 -5.301 -10.179 12.592 hybrid contribution 0.676 -0.818 0.597 1.217 sum -4.504 -6.120 -9.583 12.230 Atomic orbital electron populations 1.21510 0.93974 1.01123 1.00385 1.21048 0.95999 0.95156 0.93322 1.21713 0.99884 0.95613 0.99510 1.22575 0.90019 0.94496 0.87225 0.92220 1.86487 1.43115 1.80322 1.27642 1.23083 1.01419 0.97418 0.96005 1.22656 1.00037 0.97874 0.96513 1.19821 0.94429 0.93079 0.93317 0.96128 1.21900 1.27199 0.99369 1.06619 0.91425 1.25777 0.94907 1.00964 0.96707 1.70039 1.34668 1.37861 1.16890 0.86096 0.80090 0.81919 0.76217 1.19213 1.22757 1.17569 0.94301 0.92025 0.93085 0.93932 0.93185 0.94161 0.76216 0.90637 0.89792 0.92743 0.93655 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.01 7.51 71.98 0.54 -3.47 16 2 C -0.06 -2.16 0.92 -51.46 -0.05 -2.20 16 3 C -0.11 -4.46 6.86 71.98 0.49 -3.97 16 4 C 0.12 3.73 3.62 31.67 0.11 3.85 16 5 H 0.06 1.91 7.83 -2.39 -0.02 1.89 16 6 O -0.57 -15.44 11.83 -148.98 -1.76 -17.21 16 7 C -0.14 -4.41 6.62 31.88 0.21 -4.20 16 8 C -0.13 -5.41 4.65 31.67 0.15 -5.26 16 9 C 0.01 0.57 2.04 -10.81 -0.02 0.55 16 10 H 0.02 0.99 6.70 -2.39 -0.02 0.97 16 11 C -0.51 -28.50 8.08 25.60 0.21 -28.29 16 12 H 0.07 4.03 4.91 -2.91 -0.01 4.01 16 13 C 0.01 0.72 5.45 84.65 0.46 1.19 16 14 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 15 Si 0.93 45.03 24.67 68.60 1.69 46.73 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 18 H -0.25 -11.47 6.35 99.48 0.63 -10.84 16 19 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 20 H 0.06 2.03 7.60 -2.39 -0.02 2.01 16 21 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.04 1.83 7.10 -2.39 -0.02 1.82 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.77 7.09 -2.39 -0.02 1.76 16 25 H 0.39 6.61 9.12 -74.06 -0.68 5.93 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.05 2.36 7.85 -2.39 -0.02 2.35 16 29 H 0.04 1.82 5.78 -2.39 -0.01 1.81 16 30 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -64.32 229.79 2.70 -61.61 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.37 Total: 10.05 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 2.11 Total: -41.82 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.30 Total: -59.36 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.76 Total: -17.21 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.69 Total: 46.73 kcal Total: -64.32 2.70 -61.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372677.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.279 kcal (2) G-P(sol) polarization free energy of solvation -64.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds