Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47228 * 2 1 4 4 C 1.53001 * 109.47010 * 120.00408 * 2 1 3 5 5 H 1.08999 * 109.47167 * 294.92400 * 4 2 1 6 6 C 1.50701 * 109.46967 * 54.92908 * 4 2 1 7 7 H 1.08001 * 120.00481 * 63.10320 * 6 4 2 8 8 C 1.37882 * 119.99725 * 243.09818 * 6 4 2 9 9 N 1.31516 * 119.99950 * 354.11818 * 8 6 4 10 10 Si 1.86794 * 119.99989 * 174.11532 * 8 6 4 11 11 H 1.48501 * 109.47082 * 179.97438 * 10 8 6 12 12 H 1.48495 * 109.47460 * 300.00213 * 10 8 6 13 13 H 1.48511 * 109.46911 * 60.00590 * 10 8 6 14 14 C 1.53008 * 109.46689 * 174.92345 * 4 2 1 15 15 H 1.08998 * 113.03351 * 311.98135 * 14 4 2 16 16 C 1.54033 * 113.86151 * 179.97438 * 14 4 2 17 17 C 1.54040 * 85.82052 * 223.27695 * 16 14 4 18 18 O 1.44175 * 85.51792 * 22.57998 * 17 16 14 19 19 H 1.09006 * 109.46566 * 294.51963 * 1 2 3 20 20 H 1.08995 * 109.46929 * 54.51935 * 1 2 3 21 21 H 1.08996 * 109.47375 * 174.52366 * 1 2 3 22 22 H 1.09005 * 109.46557 * 240.00059 * 2 1 3 23 23 H 1.09002 * 109.46618 * 60.00299 * 3 2 1 24 24 H 1.08998 * 109.46899 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47251 * 300.00592 * 3 2 1 26 26 H 0.96999 * 119.99977 * 179.97438 * 9 8 6 27 27 H 1.09003 * 113.81719 * 337.49953 * 16 14 4 28 28 H 1.09002 * 113.81646 * 109.05179 * 16 14 4 29 29 H 1.09004 * 113.86053 * 136.72643 * 17 16 14 30 30 H 1.09000 * 113.86122 * 268.30230 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7528 -0.1578 2.1369 6 6 1.4377 -2.1013 1.3135 7 1 1.6562 -2.8225 0.5398 8 6 0.6079 -2.4432 2.3602 9 7 0.4335 -1.6079 3.3610 10 14 -0.2688 -4.0926 2.3566 11 1 -1.0943 -4.2170 3.5848 12 1 -1.1434 -4.1858 1.1602 13 1 0.7349 -5.1866 2.3226 14 6 3.5648 -0.8328 1.1869 15 1 3.9267 -1.1998 0.2265 16 6 4.1876 -1.5458 2.4020 17 6 5.2488 -0.4297 2.3707 18 8 4.2552 0.3397 1.6638 19 1 -0.3633 0.4265 0.9351 20 1 -0.3633 0.5965 -0.8368 21 1 -0.3634 -1.0229 -0.0981 22 1 1.8933 -0.5139 -0.8901 23 1 1.6768 1.9562 0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 -0.1506 -1.8483 4.0971 27 1 3.5583 -1.5299 3.2919 28 1 4.5834 -2.5359 2.1761 29 1 5.4982 -0.0306 3.3539 30 1 6.1276 -0.6735 1.7737 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260599532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = -36.533416 kcal Electronic energy + Delta-G solvation = -11893.003790 eV Core-core repulsion = 9881.889144 eV Total energy + Delta-G solvation = -2011.114647 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.33991 -35.37403 -32.20786 -29.14003 -27.69689 -26.28981 -24.44849 -22.31612 -19.28973 -18.74317 -16.60367 -15.31819 -14.94821 -14.60273 -14.36170 -13.09828 -12.94712 -12.27602 -11.73816 -11.38827 -11.24549 -11.18851 -11.02175 -10.87744 -10.60830 -10.08149 -9.92944 -9.75603 -9.25219 -9.06160 -8.85235 -8.52530 -8.39346 -6.03149 -4.04511 3.29700 3.35487 3.37810 4.38656 4.67738 5.29166 5.46349 5.77884 5.86803 6.06747 6.18975 6.21376 6.28963 6.58269 6.63729 6.69634 6.87369 6.90122 6.93788 7.08013 7.15491 7.31230 7.37469 7.50984 7.69322 7.83471 8.03868 8.45416 9.07789 9.57224 11.05809 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.035412 B = 0.017413 C = 0.013053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.510611 B = 1607.629892 C = 2144.573721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.142 4.142 4 C 0.039 3.961 5 H 0.079 0.921 6 C -0.504 4.504 7 H 0.051 0.949 8 C 0.071 3.929 9 N -0.888 5.888 10 Si 0.885 3.115 11 H -0.288 1.288 12 H -0.276 1.276 13 H -0.277 1.277 14 C 0.078 3.922 15 H 0.062 0.938 16 C -0.159 4.159 17 C 0.019 3.981 18 O -0.389 6.389 19 H 0.047 0.953 20 H 0.020 0.980 21 H 0.058 0.942 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 0.887 -2.680 4.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.105 4.105 3 C -0.199 4.199 4 C 0.021 3.979 5 H 0.097 0.903 6 C -0.542 4.542 7 H 0.070 0.930 8 C -0.131 4.131 9 N -0.526 5.526 10 Si 0.713 3.287 11 H -0.214 1.214 12 H -0.202 1.202 13 H -0.203 1.203 14 C 0.021 3.979 15 H 0.080 0.920 16 C -0.197 4.197 17 C -0.059 4.059 18 O -0.308 6.308 19 H 0.067 0.933 20 H 0.039 0.961 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.950 1.185 -2.527 4.836 hybrid contribution -0.403 -1.172 0.074 1.242 sum 3.546 0.013 -2.453 4.312 Atomic orbital electron populations 1.21559 0.96104 1.01079 0.99038 1.21220 0.95517 0.94028 0.99731 1.21882 1.00915 0.97668 0.99480 1.19148 0.86717 0.96635 0.95431 0.90324 1.20791 1.28019 0.97527 1.07843 0.93045 1.24913 0.96438 0.96561 0.95188 1.69906 1.37739 1.35979 1.08954 0.86770 0.79954 0.84567 0.77397 1.21351 1.20162 1.20306 1.23912 0.97205 0.82148 0.94655 0.92015 1.24424 0.96217 0.97348 1.01674 1.23760 0.92768 0.92867 0.96458 1.89660 1.41989 1.29140 1.70060 0.93337 0.96057 0.92306 0.93870 0.93527 0.92750 0.95135 0.92843 0.88314 0.92902 0.90734 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 8.75 37.16 0.33 -2.30 16 2 C -0.09 -1.91 2.50 -90.62 -0.23 -2.13 16 3 C -0.14 -2.87 8.80 37.16 0.33 -2.54 16 4 C 0.04 0.97 1.73 -91.77 -0.16 0.81 16 5 H 0.08 2.21 6.92 -51.93 -0.36 1.85 16 6 C -0.50 -13.18 6.40 -34.44 -0.22 -13.40 16 7 H 0.05 1.35 7.82 -52.49 -0.41 0.93 16 8 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 9 N -0.89 -24.88 12.62 55.43 0.70 -24.18 16 10 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 C 0.08 1.73 3.40 -26.28 -0.09 1.64 16 15 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 16 C -0.16 -3.30 7.41 -25.65 -0.19 -3.49 16 17 C 0.02 0.34 9.21 37.61 0.35 0.69 16 18 O -0.39 -8.50 10.65 -35.23 -0.38 -8.88 16 19 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 20 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.06 1.34 7.30 -51.93 -0.38 0.96 16 22 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.05 1.10 6.31 -51.93 -0.33 0.78 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.10 2.30 8.10 -51.93 -0.42 1.88 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 245.82 15.07 3.70 3.70 Total: -1.00 -27.37 245.82 -5.81 -33.18 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -4.84 Total: -0.66 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 0.02 Total: -18.92 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.70 Total: -24.18 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.38 Total: -8.88 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.37 -5.81 -33.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.350 kcal (2) G-P(sol) polarization free energy of solvation -27.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds