Wall clock time and date at job start Mon Mar 30 2020 02:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47211 * 2 1 4 4 C 1.53003 * 109.46872 * 119.99515 * 2 1 3 5 5 H 1.08999 * 109.47336 * 303.88133 * 4 2 1 6 6 C 1.50705 * 109.47106 * 183.88115 * 4 2 1 7 7 H 1.08004 * 119.99528 * 302.36062 * 6 4 2 8 8 C 1.37875 * 120.00211 * 122.35696 * 6 4 2 9 9 N 1.31516 * 119.99939 * 173.73949 * 8 6 4 10 10 Si 1.86804 * 119.99867 * 353.73759 * 8 6 4 11 11 H 1.48501 * 109.46984 * 84.95471 * 10 8 6 12 12 H 1.48499 * 109.46981 * 204.95664 * 10 8 6 13 13 H 1.48504 * 109.47060 * 324.95593 * 10 8 6 14 14 C 1.53001 * 109.47325 * 63.88258 * 4 2 1 15 15 H 1.09000 * 113.12058 * 47.93181 * 14 4 2 16 16 C 1.54036 * 113.86850 * 179.97438 * 14 4 2 17 17 C 1.54035 * 85.95653 * 136.66535 * 16 14 4 18 18 O 1.44176 * 113.86335 * 275.86988 * 14 4 2 19 19 H 1.09008 * 109.47050 * 300.00388 * 1 2 3 20 20 H 1.08994 * 109.47199 * 60.00349 * 1 2 3 21 21 H 1.08998 * 109.47310 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47085 * 239.99186 * 2 1 3 23 23 H 1.08999 * 109.47206 * 185.51925 * 3 2 1 24 24 H 1.09005 * 109.46596 * 305.51168 * 3 2 1 25 25 H 1.08999 * 109.47743 * 65.51490 * 3 2 1 26 26 H 0.97003 * 119.99537 * 179.97438 * 9 8 6 27 27 H 1.08999 * 113.81628 * 250.95540 * 16 14 4 28 28 H 1.09004 * 113.81393 * 22.37915 * 16 14 4 29 29 H 1.08994 * 113.86308 * 91.62805 * 17 16 14 30 30 H 1.08999 * 113.86032 * 223.33806 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6209 -0.2490 2.1379 6 6 3.5439 -0.6385 1.2984 7 1 4.1328 -1.0226 0.4786 8 6 4.1680 -0.0723 2.3897 9 7 5.4787 -0.1102 2.4906 10 14 3.1518 0.7485 3.7251 11 1 2.6920 -0.2757 4.6972 12 1 3.9816 1.7602 4.4272 13 1 1.9737 1.4134 3.1123 14 6 1.6112 -2.1891 1.2016 15 1 1.8173 -2.6642 0.2425 16 6 2.0747 -3.0136 2.4174 17 6 0.6584 -3.6191 2.4090 18 8 0.2764 -2.4232 1.6937 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1255 1.4440 -0.0988 24 1 1.5983 1.9839 -0.8366 25 1 1.7596 1.9271 0.9352 26 1 5.9178 0.2885 3.2582 27 1 2.8618 -3.7318 2.1880 28 1 2.2910 -2.4122 3.3004 29 1 0.5725 -4.5317 1.8193 30 1 0.2097 -3.7051 3.3986 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260599536.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:33 Heat of formation + Delta-G solvation = -34.443319 kcal Electronic energy + Delta-G solvation = -11965.389948 eV Core-core repulsion = 9954.365935 eV Total energy + Delta-G solvation = -2011.024013 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.53895 -35.59485 -32.28414 -29.50424 -28.01326 -26.51379 -24.52940 -22.24898 -19.46519 -18.87222 -17.11437 -15.48410 -15.14128 -14.84616 -14.13964 -13.24595 -13.09180 -12.49076 -12.14224 -11.68262 -11.61220 -11.35460 -11.26333 -10.78914 -10.44381 -10.32388 -9.96527 -9.71989 -9.49776 -9.28198 -8.96342 -8.74668 -8.50240 -6.11703 -4.09510 3.26773 3.36090 3.40547 4.39386 4.44280 5.17944 5.32974 5.61123 5.69332 5.86674 6.02028 6.03570 6.07874 6.39152 6.47083 6.53876 6.65139 6.67207 6.71202 6.77259 6.90273 7.07596 7.13654 7.26973 7.40893 7.48843 7.76344 8.49720 8.94111 9.52482 11.01232 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.031316 B = 0.020897 C = 0.015710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.885619 B = 1339.597816 C = 1781.871095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.131 4.131 4 C 0.020 3.980 5 H 0.044 0.956 6 C -0.499 4.499 7 H 0.074 0.926 8 C 0.077 3.923 9 N -0.898 5.898 10 Si 0.868 3.132 11 H -0.277 1.277 12 H -0.291 1.291 13 H -0.261 1.261 14 C 0.080 3.920 15 H 0.074 0.926 16 C -0.164 4.164 17 C 0.020 3.980 18 O -0.392 6.392 19 H 0.043 0.957 20 H 0.035 0.965 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.029 0.971 25 H 0.041 0.959 26 H 0.264 0.736 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 -2.597 -0.974 7.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.188 4.188 4 C 0.001 3.999 5 H 0.062 0.938 6 C -0.537 4.537 7 H 0.092 0.908 8 C -0.125 4.125 9 N -0.535 5.535 10 Si 0.696 3.304 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.186 1.186 14 C 0.023 3.977 15 H 0.092 0.908 16 C -0.202 4.202 17 C -0.057 4.057 18 O -0.312 6.312 19 H 0.062 0.938 20 H 0.054 0.946 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.522 -2.393 -0.890 7.944 hybrid contribution -0.225 0.295 0.869 0.945 sum -7.747 -2.098 -0.021 8.026 Atomic orbital electron populations 1.21915 0.97326 1.01341 0.99675 1.21174 0.93080 0.96529 0.99613 1.21695 1.02237 0.95766 0.99146 1.19408 0.96693 0.89030 0.94770 0.93763 1.20726 0.88390 1.39335 1.05212 0.90782 1.25018 0.94614 0.95505 0.97313 1.69901 1.08277 1.45012 1.30346 0.87025 0.80751 0.80217 0.82380 1.20275 1.21711 1.18630 1.23875 0.78833 0.99582 0.95435 0.90815 1.24440 0.95939 0.98951 1.00822 1.23839 0.95550 0.89740 0.96570 1.89699 1.31962 1.40254 1.69287 0.93783 0.94604 0.92418 0.92661 0.91341 0.95198 0.93977 0.92627 0.91819 0.89420 0.91424 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.76 37.16 0.33 -2.40 16 2 C -0.09 -1.78 2.50 -90.62 -0.23 -2.01 16 3 C -0.13 -2.70 8.77 37.16 0.33 -2.38 16 4 C 0.02 0.47 1.38 -91.77 -0.13 0.34 16 5 H 0.04 1.09 4.69 -51.93 -0.24 0.85 16 6 C -0.50 -13.27 7.00 -34.44 -0.24 -13.51 16 7 H 0.07 2.15 8.06 -52.48 -0.42 1.72 16 8 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 10 Si 0.87 21.43 27.02 -169.99 -4.59 16.84 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.26 -6.30 6.12 56.52 0.35 -5.96 16 14 C 0.08 1.69 3.37 -26.25 -0.09 1.60 16 15 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 16 C -0.16 -3.26 7.39 -25.65 -0.19 -3.45 16 17 C 0.02 0.34 9.23 37.64 0.35 0.69 16 18 O -0.39 -8.02 10.65 -35.23 -0.38 -8.40 16 19 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 20 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.06 1.09 6.29 -51.93 -0.33 0.76 16 22 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.07 1.52 7.32 -51.93 -0.38 1.14 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.04 0.89 7.57 -51.93 -0.39 0.49 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.09 1.90 8.10 -51.93 -0.42 1.48 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 241.30 15.07 3.64 3.64 Total: -1.00 -28.48 241.30 -5.29 -33.76 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.76 Total: -1.01 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 0.03 Total: -19.07 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.77 Total: -25.76 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.38 Total: -8.40 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.59 Total: 16.84 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.48 -5.29 -33.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599536.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.680 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds