Wall clock time and date at job start Mon Mar 30 2020 02:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46982 * 2 1 4 4 C 1.52995 * 109.47096 * 120.00105 * 2 1 3 5 5 H 1.09004 * 109.47405 * 294.76873 * 4 2 1 6 6 C 1.50700 * 109.47174 * 54.76984 * 4 2 1 7 7 H 1.08000 * 120.00065 * 55.69519 * 6 4 2 8 8 C 1.37879 * 119.99827 * 235.69252 * 6 4 2 9 9 N 1.31513 * 120.00402 * 5.72666 * 8 6 4 10 10 Si 1.86800 * 120.00074 * 185.72695 * 8 6 4 11 11 H 1.48504 * 109.46989 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47664 * 119.99964 * 10 8 6 13 13 H 1.48504 * 109.47261 * 240.00140 * 10 8 6 14 14 C 1.53004 * 109.47230 * 174.76737 * 4 2 1 15 15 H 1.08999 * 113.03404 * 50.33698 * 14 4 2 16 16 C 1.54035 * 113.86542 * 182.30736 * 14 4 2 17 17 C 1.54035 * 85.81860 * 136.85813 * 16 14 4 18 18 O 1.44175 * 113.86744 * 278.35456 * 14 4 2 19 19 H 1.09000 * 109.47042 * 294.28058 * 1 2 3 20 20 H 1.08999 * 109.47058 * 54.27918 * 1 2 3 21 21 H 1.09004 * 109.46875 * 174.27807 * 1 2 3 22 22 H 1.09000 * 109.46862 * 240.00021 * 2 1 3 23 23 H 1.09004 * 109.46950 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47241 * 299.99755 * 3 2 1 25 25 H 1.09000 * 109.47305 * 60.00293 * 3 2 1 26 26 H 0.97003 * 120.00612 * 179.97438 * 9 8 6 27 27 H 1.08995 * 113.82389 * 251.08223 * 16 14 4 28 28 H 1.09006 * 113.81553 * 22.51750 * 16 14 4 29 29 H 1.08998 * 113.86471 * 91.57409 * 17 16 14 30 30 H 1.09004 * 113.86343 * 223.14595 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7552 -0.1562 2.1368 6 6 1.4347 -2.0998 1.3156 7 1 1.5516 -2.7814 0.4861 8 6 0.7317 -2.4907 2.4355 9 7 0.4926 -1.6259 3.3970 10 14 0.1189 -4.2488 2.5870 11 1 0.5151 -5.0169 1.3793 12 1 0.7150 -4.8787 3.7924 13 1 -1.3611 -4.2484 2.7093 14 6 3.5644 -0.8362 1.1852 15 1 4.0548 0.1126 0.9676 16 6 4.1822 -1.5992 2.3721 17 6 5.0691 -2.2912 1.3199 18 8 4.0332 -1.9341 0.3768 19 1 -0.3633 0.4226 0.9368 20 1 -0.3633 0.6000 -0.8343 21 1 -0.3633 -1.0226 -0.1025 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 -0.0023 -1.9009 4.1847 27 1 4.7347 -0.9639 3.0643 28 1 3.4858 -2.2710 2.8740 29 1 6.0191 -1.7867 1.1433 30 1 5.1783 -3.3649 1.4724 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260599546.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:37 Heat of formation + Delta-G solvation = -49.747353 kcal Electronic energy + Delta-G solvation = -11944.905984 eV Core-core repulsion = 9933.218338 eV Total energy + Delta-G solvation = -2011.687646 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.94557 -37.13895 -34.18764 -30.69040 -29.49131 -28.13702 -26.27787 -24.07184 -21.07450 -20.39257 -18.49013 -16.91145 -16.78227 -16.33348 -15.97992 -15.02222 -14.81156 -13.82177 -13.58854 -13.20906 -13.10209 -12.84913 -12.76615 -12.64700 -12.38859 -11.85665 -11.72768 -11.45247 -11.04573 -10.88912 -10.73298 -10.34431 -10.08827 -8.05130 -6.05094 1.36420 1.41032 1.51435 2.46941 3.11236 3.25244 3.81294 4.21481 4.36024 4.44272 4.48849 4.57449 4.60353 4.92151 4.99272 5.03846 5.12982 5.18482 5.23594 5.38409 5.52020 5.55923 5.65682 5.70929 5.81018 5.91598 6.02187 6.56425 7.06914 7.55911 9.04038 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.030115 B = 0.020269 C = 0.014230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.556981 B = 1381.055054 C = 1967.231687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.138 4.138 4 C 0.031 3.969 5 H 0.054 0.946 6 C -0.479 4.479 7 H 0.034 0.966 8 C 0.022 3.978 9 N -0.923 5.923 10 Si 0.930 3.070 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.283 1.283 14 C 0.066 3.934 15 H 0.083 0.917 16 C -0.169 4.169 17 C 0.032 3.968 18 O -0.401 6.401 19 H 0.032 0.968 20 H 0.052 0.948 21 H 0.034 0.966 22 H 0.039 0.961 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.258 0.742 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.515 2.584 -2.782 6.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 C -0.195 4.195 4 C 0.012 3.988 5 H 0.072 0.928 6 C -0.517 4.517 7 H 0.052 0.948 8 C -0.175 4.175 9 N -0.564 5.564 10 Si 0.758 3.242 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.209 1.209 14 C 0.008 3.992 15 H 0.101 0.899 16 C -0.207 4.207 17 C -0.044 4.044 18 O -0.320 6.320 19 H 0.051 0.949 20 H 0.071 0.929 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.338 2.480 -2.860 6.544 hybrid contribution -0.511 -1.081 0.518 1.303 sum 4.827 1.399 -2.342 5.545 Atomic orbital electron populations 1.21466 0.96034 1.00119 0.99405 1.21115 0.95607 0.95439 0.98496 1.21849 1.00656 0.95764 1.01257 1.19132 0.89178 0.95569 0.94906 0.92809 1.20976 1.31032 0.99105 1.00609 0.94797 1.25434 0.96466 0.99492 0.96146 1.69986 1.42484 1.34727 1.09235 0.85929 0.77971 0.82587 0.77750 1.20059 1.20659 1.20945 1.23878 0.98013 0.89371 0.87894 0.89937 1.24390 0.98225 0.99797 0.98245 1.23964 0.92133 1.00961 0.87372 1.89721 1.48617 1.48474 1.45221 0.94918 0.92885 0.94664 0.94202 0.92647 0.92088 0.93450 0.93261 0.91202 0.91159 0.88405 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 8.74 71.98 0.63 -4.20 16 2 C -0.09 -3.76 2.50 -10.79 -0.03 -3.79 16 3 C -0.14 -4.77 8.99 71.98 0.65 -4.12 16 4 C 0.03 1.51 1.89 -11.54 -0.02 1.48 16 5 H 0.05 2.92 6.92 -2.38 -0.02 2.90 16 6 C -0.48 -26.15 5.24 25.60 0.13 -26.01 16 7 H 0.03 1.97 7.76 -2.91 -0.02 1.95 16 8 C 0.02 1.22 5.21 84.66 0.44 1.66 16 9 N -0.92 -52.66 12.62 21.45 0.27 -52.39 16 10 Si 0.93 44.45 29.54 68.60 2.03 46.48 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 14 C 0.07 2.83 4.08 30.89 0.13 2.95 16 15 H 0.08 3.13 6.45 -2.39 -0.02 3.11 16 16 C -0.17 -6.81 7.71 31.29 0.24 -6.57 16 17 C 0.03 1.13 9.22 72.27 0.67 1.80 16 18 O -0.40 -17.93 11.50 -148.98 -1.71 -19.65 16 19 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 20 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.03 1.63 7.30 -2.38 -0.02 1.61 16 22 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.05 1.77 6.47 -2.39 -0.02 1.76 16 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 26 H 0.26 14.14 8.31 -92.71 -0.77 13.36 16 27 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.07 3.35 7.09 -2.38 -0.02 3.34 16 29 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.08 2.76 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -60.05 244.01 4.51 -55.54 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.09 Total: 6.83 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 2.84 Total: -36.80 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.27 Total: -52.39 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.71 Total: -19.65 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -60.05 4.51 -55.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599546.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.788 kcal (2) G-P(sol) polarization free energy of solvation -60.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds