Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47271 * 275.57715 * 3 2 1 5 5 H 1.48502 * 109.46864 * 35.58152 * 3 2 1 6 6 H 1.48500 * 109.47121 * 155.57714 * 3 2 1 7 7 C 1.37877 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00270 * 354.64356 * 7 2 1 9 9 C 1.50702 * 120.00014 * 174.65121 * 7 2 1 10 10 C 1.52995 * 112.94018 * 85.09403 * 9 7 2 11 11 C 1.50697 * 109.47134 * 53.67614 * 10 9 7 12 12 N 1.34779 * 120.00073 * 186.21366 * 11 10 9 13 13 O 1.21276 * 120.00148 * 5.93494 * 11 10 9 14 14 C 1.53937 * 113.82871 * 216.75521 * 9 7 2 15 15 N 1.47967 * 86.18248 * 90.64658 * 14 9 7 16 16 C 1.47966 * 90.76148 * 24.68849 * 15 14 9 17 17 H 0.96996 * 119.99727 * 0.02562 * 1 2 3 18 18 H 1.08995 * 109.47308 * 293.67145 * 10 9 7 19 19 H 1.09012 * 109.46881 * 173.67430 * 10 9 7 20 20 H 0.96998 * 120.00702 * 185.28082 * 12 11 10 21 21 H 0.97009 * 119.99818 * 5.28378 * 12 11 10 22 22 H 1.08998 * 113.75700 * 204.96405 * 14 9 7 23 23 H 1.09001 * 113.75671 * 336.33117 * 14 9 7 24 24 H 1.00895 * 110.99971 * 271.79843 * 15 14 9 25 25 H 1.08999 * 113.76103 * 220.99274 * 16 15 14 26 26 H 1.09001 * 113.75689 * 89.62568 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3789 2.1144 -1.3934 5 1 1.5105 2.6157 0.8147 6 1 3.6007 1.4090 0.5789 7 6 2.0045 -1.1941 -0.0005 8 1 1.4681 -2.1273 0.0864 9 6 3.5066 -1.1969 -0.1222 10 6 4.2141 -1.0129 1.2218 11 6 3.7102 -2.0427 2.1999 12 7 4.1003 -1.9952 3.4891 13 8 2.9497 -2.9111 1.8281 14 6 4.0605 -2.3640 -0.9593 15 7 3.9435 -1.4559 -2.1217 16 6 4.0398 -0.2757 -1.2344 17 1 -0.4849 0.8400 -0.0004 18 1 4.0081 -0.0144 1.6071 19 1 5.2888 -1.1356 1.0865 20 1 3.8384 -2.7004 4.1014 21 1 4.6430 -1.2557 3.8047 22 1 5.0880 -2.6321 -0.7132 23 1 3.3945 -3.2256 -1.0063 24 1 3.0275 -1.5201 -2.5398 25 1 3.3572 0.5311 -1.5011 26 1 5.0612 0.0669 -1.0687 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260601711.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = 3.015940 kcal Electronic energy + Delta-G solvation = -11756.162399 eV Core-core repulsion = 9643.222398 eV Total energy + Delta-G solvation = -2112.940001 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.40589 -37.73439 -32.90491 -32.34577 -30.13093 -25.87237 -25.12627 -23.19920 -19.98466 -18.72186 -16.93686 -15.99840 -15.88274 -15.57953 -14.47150 -13.77613 -13.27536 -13.04210 -12.70625 -12.37323 -11.76688 -11.74186 -10.95463 -10.17511 -10.09745 -10.01458 -9.47447 -9.33185 -9.00918 -8.64391 -8.57396 -7.52932 -6.09197 -4.07768 3.19208 3.26031 3.33066 3.57323 4.25421 4.34041 5.00696 5.29495 5.55835 5.90166 5.99763 6.13213 6.31709 6.39355 6.46405 6.62473 6.87540 6.98064 7.20303 7.40731 7.70110 8.02256 8.24264 8.57235 9.03454 9.16704 9.51473 11.03279 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.033691 B = 0.021960 C = 0.017908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.893476 B = 1274.750522 C = 1563.164133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.256 1.256 7 C -0.481 4.481 8 H 0.088 0.912 9 C 0.012 3.988 10 C -0.139 4.139 11 C 0.522 3.478 12 N -0.877 5.877 13 O -0.512 6.512 14 C 0.027 3.973 15 N -0.657 5.657 16 C -0.003 4.003 17 H 0.263 0.737 18 H 0.082 0.918 19 H 0.068 0.932 20 H 0.390 0.610 21 H 0.392 0.608 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.341 0.659 25 H 0.061 0.939 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.592 0.711 4.130 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.181 1.181 7 C -0.519 4.519 8 H 0.106 0.894 9 C 0.010 3.990 10 C -0.180 4.180 11 C 0.308 3.692 12 N -0.442 5.442 13 O -0.385 6.385 14 C -0.103 4.103 15 N -0.283 5.283 16 C -0.133 4.133 17 H 0.073 0.927 18 H 0.101 0.899 19 H 0.087 0.913 20 H 0.219 0.781 21 H 0.219 0.781 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.156 0.844 25 H 0.079 0.921 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.636 0.261 3.200 10.157 hybrid contribution -0.357 1.283 1.175 1.776 sum 9.279 1.544 4.375 10.374 Atomic orbital electron populations 1.69900 1.06208 1.26734 1.50350 1.25080 0.94727 0.98757 0.94934 0.87144 0.80460 0.84073 0.77567 1.20843 1.22646 1.18130 1.20670 0.86963 0.95003 1.49284 0.89441 1.21150 0.96984 0.92230 0.88682 1.22165 0.99352 0.98202 0.98314 1.20704 0.79901 0.86273 0.82321 1.44075 1.58923 1.29257 1.11914 1.90701 1.32479 1.37206 1.78101 1.23542 0.98855 0.96716 0.91219 1.65130 1.36017 1.03872 1.23298 1.23968 0.99236 0.94839 0.95266 0.92699 0.89932 0.91329 0.78105 0.78142 0.91320 0.91389 0.84441 0.92063 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.96 55.43 0.77 -26.49 15 2 C 0.07 1.88 5.44 -17.82 -0.10 1.78 15 3 Si 0.88 20.91 23.64 -169.99 -4.02 16.90 15 4 H -0.28 -6.67 6.81 56.52 0.38 -6.29 15 5 H -0.30 -7.28 7.11 56.52 0.40 -6.88 15 6 H -0.26 -5.48 4.82 56.52 0.27 -5.21 15 7 C -0.48 -13.33 7.14 -34.44 -0.25 -13.57 15 8 H 0.09 2.80 7.53 -52.49 -0.40 2.41 15 9 C 0.01 0.27 0.09 -154.72 -0.01 0.25 15 10 C -0.14 -2.74 4.88 -27.89 -0.14 -2.87 15 11 C 0.52 10.51 7.74 -10.99 -0.09 10.43 15 12 N -0.88 -12.71 8.87 31.22 0.28 -12.44 15 13 O -0.51 -12.65 15.03 5.56 0.08 -12.57 15 14 C 0.03 0.57 7.64 -2.76 -0.02 0.55 15 15 N -0.66 -13.96 8.56 -116.74 -1.00 -14.96 15 16 C 0.00 -0.07 6.24 -2.76 -0.02 -0.09 15 17 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 18 H 0.08 1.61 5.70 -51.93 -0.30 1.32 15 19 H 0.07 1.13 8.05 -51.92 -0.42 0.72 15 20 H 0.39 5.06 8.93 -40.82 -0.36 4.69 15 21 H 0.39 4.33 8.83 -40.82 -0.36 3.97 15 22 H 0.07 1.32 8.03 -51.93 -0.42 0.90 15 23 H 0.07 1.54 8.09 -51.93 -0.42 1.12 15 24 H 0.34 7.49 8.63 -39.29 -0.34 7.15 15 25 H 0.06 1.41 3.74 -51.93 -0.19 1.21 15 26 H 0.07 1.42 8.10 -51.93 -0.42 1.00 15 LS Contribution 211.91 15.07 3.19 3.19 Total: -1.00 -32.36 211.91 -4.21 -36.57 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -2.91 Total: 13.32 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.62 Total: -3.52 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.05 Total: -53.89 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.02 Total: 16.90 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -32.36 -4.21 -36.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260601711.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.589 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds