Wall clock time and date at job start Mon Mar 30 2020 02:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 O 1.42898 * 112.85457 * 53.79921 * 12 11 10 14 14 C 1.53785 * 113.61129 * 282.49141 * 12 11 10 15 15 C 1.53782 * 87.08416 * 220.01965 * 14 12 11 16 16 C 1.53781 * 113.61359 * 184.99815 * 12 11 10 17 17 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 19 19 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 20 20 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 21 21 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 22 22 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 23 23 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 24 24 H 0.96707 * 113.99846 * 309.66943 * 13 12 11 25 25 H 1.09001 * 113.61633 * 334.57474 * 14 12 11 26 26 H 1.09000 * 113.61144 * 105.46830 * 14 12 11 27 27 H 1.09004 * 113.61448 * 270.88673 * 15 14 12 28 28 H 1.09002 * 113.61332 * 139.98082 * 15 14 12 29 29 H 1.08993 * 113.61692 * 254.52688 * 16 12 11 30 30 H 1.09002 * 113.61799 * 25.43079 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4743 -6.1501 0.0005 13 8 3.4253 -6.0666 1.0638 14 6 3.1072 -6.4201 -1.3748 15 6 2.9647 -7.9183 -1.0587 16 6 1.8077 -7.5304 -0.1228 17 1 -0.4850 0.8401 -0.0004 18 1 0.6246 -2.5571 -0.8897 19 1 0.6240 -2.5566 0.8902 20 1 2.8718 -3.6044 0.8905 21 1 2.8718 -3.6044 -0.8895 22 1 0.8531 -5.0451 0.8897 23 1 0.8537 -5.0446 -0.8902 24 1 3.8650 -5.2080 1.1318 25 1 2.4913 -6.0898 -2.2113 26 1 4.1420 -6.0866 -1.4522 27 1 3.8253 -8.3385 -0.5380 28 1 2.6524 -8.5173 -1.9141 29 1 1.7934 -8.0933 0.8104 30 1 0.8365 -7.5038 -0.6171 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260856702.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:41 Heat of formation + Delta-G solvation = -76.511174 kcal Electronic energy + Delta-G solvation = -11192.661544 eV Core-core repulsion = 9179.813332 eV Total energy + Delta-G solvation = -2012.848212 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.63142 -36.13161 -35.46894 -33.85604 -29.75392 -26.74564 -26.15109 -23.56698 -21.71938 -20.53900 -18.55224 -17.34477 -16.60134 -16.27359 -15.86706 -15.71406 -14.69515 -14.18939 -13.77697 -13.65003 -13.24398 -12.83047 -12.56235 -12.46970 -12.36471 -12.03089 -11.78004 -11.61365 -11.48665 -11.33041 -10.74213 -10.56070 -10.38975 -8.20857 -6.32658 1.39416 1.42578 1.50569 2.40316 3.12028 3.18333 3.64176 3.75945 3.94302 4.01506 4.32651 4.44334 4.65001 4.79611 4.83318 4.88057 4.99405 5.06299 5.11167 5.23235 5.27867 5.41478 5.49588 5.51878 5.74892 5.84705 6.23749 6.78786 6.84906 7.36971 8.90835 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.084000 B = 0.007653 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.251904 B = 3657.787748 C = 3759.922244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.099 4.099 11 C -0.129 4.129 12 C 0.100 3.900 13 O -0.560 6.560 14 C -0.165 4.165 15 C -0.126 4.126 16 C -0.129 4.129 17 H 0.264 0.736 18 H -0.010 1.010 19 H -0.013 1.013 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.387 0.613 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.587 -11.992 -1.990 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.137 4.137 11 C -0.166 4.166 12 C 0.059 3.941 13 O -0.368 6.368 14 C -0.202 4.202 15 C -0.163 4.163 16 C -0.166 4.166 17 H 0.072 0.928 18 H 0.009 0.991 19 H 0.006 0.994 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.237 0.763 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.255 -12.497 -1.893 13.688 hybrid contribution 0.153 1.714 0.029 1.721 sum 5.408 -10.783 -1.865 12.206 Atomic orbital electron populations 1.70100 1.07897 1.27863 1.51696 1.26022 0.95778 1.03500 0.94698 0.85491 0.78274 0.77994 0.79250 1.19059 1.20839 1.19110 1.21728 0.93649 0.92471 1.50569 0.91995 1.19003 0.94489 0.93270 0.94574 1.21403 0.98202 0.93521 1.00553 1.22079 0.98297 0.94306 1.01959 1.22364 0.89300 0.95052 0.87371 1.86348 1.57409 1.40197 1.52857 1.23612 1.01655 0.97612 0.97343 1.22714 0.98322 0.95719 0.99523 1.23102 0.98987 0.93973 1.00570 0.92761 0.99140 0.99449 0.92760 0.92667 0.92881 0.91104 0.76303 0.89089 0.91232 0.90199 0.89715 0.91138 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.27 4.97 29.85 0.15 1.41 16 10 C -0.10 -4.02 4.72 30.59 0.14 -3.87 16 11 C -0.13 -4.39 4.85 30.59 0.15 -4.24 16 12 C 0.10 2.87 1.38 -10.27 -0.01 2.85 16 13 O -0.56 -16.86 13.39 -148.98 -1.99 -18.86 16 14 C -0.16 -4.09 7.32 31.12 0.23 -3.86 16 15 C -0.13 -2.68 8.02 31.12 0.25 -2.43 16 16 C -0.13 -3.10 7.47 31.12 0.23 -2.87 16 17 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 18 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 19 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 20 H 0.05 2.09 6.75 -2.39 -0.02 2.07 16 21 H 0.05 2.15 8.05 -2.39 -0.02 2.13 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 24 H 0.39 10.33 7.18 -74.05 -0.53 9.80 16 25 H 0.09 2.19 8.04 -2.39 -0.02 2.18 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.21 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -64.83 250.05 2.72 -62.12 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.57 Total: 11.57 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 1.83 Total: -43.85 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.28 Total: -57.46 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.99 Total: -18.86 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -64.83 2.72 -62.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856702.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.392 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds