Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00152 * 2 1 4 4 H 1.48510 * 109.47150 * 240.00418 * 3 2 1 5 5 H 1.48498 * 109.46950 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47418 * 120.00053 * 3 2 1 7 7 C 1.37880 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99837 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00185 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47379 * 180.02562 * 9 7 2 11 11 C 1.46834 * 110.92846 * 294.76639 * 10 9 7 12 12 C 1.53410 * 108.72608 * 178.09284 * 11 10 9 13 13 C 1.53311 * 107.99992 * 294.04964 * 12 11 10 14 14 C 1.50492 * 109.06603 * 45.79084 * 13 12 11 15 15 O 1.21278 * 118.68996 * 163.77453 * 14 13 12 16 16 N 1.33491 * 122.62084 * 343.74268 * 14 13 12 17 17 H 0.97000 * 120.00016 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.46682 * 60.00433 * 9 7 2 19 19 H 1.09004 * 109.47002 * 300.00927 * 9 7 2 20 20 H 1.09000 * 109.75312 * 58.24798 * 11 10 9 21 21 H 1.09003 * 109.62681 * 297.85363 * 11 10 9 22 22 H 1.09002 * 109.75372 * 174.42424 * 12 11 10 23 23 H 1.08996 * 109.75748 * 53.67832 * 12 11 10 24 24 H 1.08996 * 109.54483 * 285.91351 * 13 12 11 25 25 H 1.09003 * 109.60709 * 165.70223 * 13 12 11 26 26 H 0.97001 * 117.59262 * 182.80083 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9831 -3.6410 -1.2459 12 6 3.9935 -4.7931 -1.1723 13 6 5.0025 -4.4683 -0.0647 14 6 4.2589 -3.9891 1.1527 15 8 4.8385 -3.9669 2.2177 16 7 2.9869 -3.5868 1.1069 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5567 -0.8904 19 1 0.6246 -2.5571 0.8896 20 1 3.5140 -2.6969 -1.3680 21 1 2.3139 -3.7958 -2.0922 22 1 4.5119 -4.8899 -2.1263 23 1 3.4755 -5.7230 -0.9378 24 1 5.6818 -3.6879 -0.4076 25 1 5.5722 -5.3635 0.1851 26 1 2.5913 -3.2530 1.9273 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260869034.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = -16.131681 kcal Electronic energy + Delta-G solvation = -11455.262931 eV Core-core repulsion = 9341.492627 eV Total energy + Delta-G solvation = -2113.770304 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 184.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.88737 -36.84457 -33.50270 -32.67608 -30.59451 -27.20523 -25.04105 -22.84624 -22.00284 -18.68816 -17.11137 -16.17374 -16.08867 -15.24318 -14.57944 -13.80674 -13.42718 -13.23305 -13.11502 -12.20170 -11.90329 -11.33057 -11.20360 -10.83269 -10.73676 -10.52275 -10.31612 -10.12862 -9.43573 -9.18701 -8.61856 -6.99656 -6.20462 -4.32713 3.18190 3.20655 3.25716 3.29176 3.76083 4.27822 4.76577 5.08785 5.14960 5.23965 5.40375 5.75487 5.98140 6.04913 6.28124 6.39924 6.46633 6.78268 7.23316 7.31206 7.68342 7.77258 7.99648 8.57855 8.71343 9.16584 9.36678 10.83687 Molecular weight = 184.10amu Principal moments of inertia in cm(-1) A = 0.048831 B = 0.012986 C = 0.012109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.269050 B = 2155.626743 C = 2311.826581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.559 4.559 8 H 0.057 0.943 9 C 0.160 3.840 10 N -0.307 5.307 11 C 0.030 3.970 12 C -0.123 4.123 13 C -0.134 4.134 14 C 0.503 3.497 15 O -0.585 6.585 16 N -0.531 5.531 17 H 0.266 0.734 18 H 0.053 0.947 19 H 0.042 0.958 20 H 0.057 0.943 21 H 0.090 0.910 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -6.110 -3.659 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.598 4.598 8 H 0.075 0.925 9 C 0.035 3.965 10 N -0.126 5.126 11 C -0.098 4.098 12 C -0.161 4.161 13 C -0.174 4.174 14 C 0.288 3.712 15 O -0.465 6.465 16 N -0.270 5.270 17 H 0.076 0.924 18 H 0.071 0.929 19 H 0.060 0.940 20 H 0.075 0.925 21 H 0.108 0.892 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.823 -6.485 -3.269 8.718 hybrid contribution 0.576 2.073 0.052 2.152 sum 5.399 -4.412 -3.217 7.679 Atomic orbital electron populations 1.69913 1.06024 1.27446 1.48980 1.24941 0.94827 0.99379 0.94330 0.86622 0.79674 0.82781 0.78827 1.20138 1.20976 1.20095 1.21539 0.93229 0.91646 1.53391 0.92500 1.20427 0.90783 0.85718 0.99601 1.64223 1.09812 1.44528 0.94056 1.22533 0.96477 0.97801 0.92987 1.21810 0.96496 0.99650 0.98158 1.21701 0.98700 1.02978 0.94023 1.20163 0.81167 0.78997 0.90846 1.90694 1.65557 1.58924 1.31299 1.45188 1.10462 1.61848 1.09535 0.92402 0.92929 0.93967 0.92512 0.89206 0.90801 0.90683 0.88942 0.88805 0.75349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 13.29 55.43 0.74 -24.13 15 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 15 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.56 -14.66 7.96 -34.44 -0.27 -14.93 15 8 H 0.06 1.52 6.95 -52.49 -0.36 1.15 15 9 C 0.16 3.81 5.09 -4.98 -0.03 3.79 15 10 N -0.31 -6.20 5.27 -114.87 -0.61 -6.80 15 11 C 0.03 0.53 5.40 -3.65 -0.02 0.51 15 12 C -0.12 -1.70 6.26 -26.36 -0.17 -1.87 15 13 C -0.13 -2.04 6.16 -27.82 -0.17 -2.21 15 14 C 0.50 9.98 7.73 -11.66 -0.09 9.89 15 15 O -0.58 -13.42 17.81 5.56 0.10 -13.32 15 16 N -0.53 -10.86 4.92 30.93 0.15 -10.71 15 17 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 18 H 0.05 1.30 8.13 -51.93 -0.42 0.88 15 19 H 0.04 1.07 8.13 -51.93 -0.42 0.65 15 20 H 0.06 1.09 6.76 -51.93 -0.35 0.74 15 21 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 22 H 0.07 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.09 1.33 8.14 -51.93 -0.42 0.90 15 25 H 0.09 1.25 8.14 -51.93 -0.42 0.82 15 26 H 0.41 8.56 8.43 -185.88 -1.57 6.99 15 LS Contribution 223.64 15.07 3.37 3.37 Total: -1.00 -29.58 223.64 -6.49 -36.07 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.38 Total: 2.59 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.84 Total: -3.05 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.28 Total: -41.64 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.10 Total: -13.32 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.58 -6.49 -36.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260869034.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.936 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds