Wall clock time and date at job start Mon Mar 30 2020 02:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99703 * 2 1 4 4 H 1.48492 * 109.47169 * 270.00067 * 3 2 1 5 5 H 1.48502 * 109.47026 * 29.99944 * 3 2 1 6 6 H 1.48496 * 109.46662 * 149.99856 * 3 2 1 7 7 C 1.37878 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00514 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99279 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46592 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46780 * 180.02562 * 10 9 7 12 12 O 1.42903 * 110.42936 * 300.69890 * 11 10 9 13 13 C 1.54884 * 110.60201 * 63.31622 * 11 10 9 14 14 C 1.54891 * 102.75037 * 156.67771 * 13 11 10 15 15 C 1.54269 * 104.19339 * 322.05787 * 14 13 11 16 16 C 1.53880 * 106.59932 * 23.61222 * 15 14 13 17 17 H 0.96994 * 119.99982 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47318 * 59.99817 * 9 7 2 19 19 H 1.08999 * 109.47009 * 300.00062 * 9 7 2 20 20 H 1.08997 * 109.46939 * 59.99926 * 10 9 7 21 21 H 1.08994 * 109.47012 * 299.99774 * 10 9 7 22 22 H 0.96700 * 114.00311 * 57.46311 * 12 11 10 23 23 H 1.09001 * 110.75738 * 274.99492 * 13 11 10 24 24 H 1.08996 * 110.75739 * 38.36218 * 13 11 10 25 25 H 1.08996 * 110.48563 * 203.38344 * 14 13 11 26 26 H 1.09000 * 110.48327 * 80.73607 * 14 13 11 27 27 H 1.08999 * 110.03179 * 264.32926 * 15 14 13 28 28 H 1.08998 * 110.03159 * 142.89678 * 15 14 13 29 29 H 1.08997 * 110.02784 * 240.71715 * 16 15 14 30 30 H 1.08994 * 110.03400 * 119.28046 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5517 -2.6364 -0.0001 12 8 6.0514 -1.9512 -1.1503 13 6 6.0956 -1.9870 1.2965 14 6 7.5144 -2.5969 1.4152 15 6 7.3395 -4.0557 0.9448 16 6 6.0916 -4.0808 0.0448 17 1 -0.4850 0.8400 -0.0004 18 1 3.8746 -0.6807 0.8905 19 1 3.8752 -0.6795 -0.8894 20 1 3.6586 -3.1493 -0.8920 21 1 3.6580 -3.1513 0.8879 22 1 5.7434 -1.0379 -1.2288 23 1 6.1485 -0.9032 1.1930 24 1 5.4828 -2.2646 2.1541 25 1 7.8566 -2.5682 2.4497 26 1 8.2125 -2.0679 0.7665 27 1 7.1933 -4.7101 1.8041 28 1 8.2150 -4.3728 0.3781 29 1 5.3399 -4.7474 0.4674 30 1 6.3614 -4.4099 -0.9586 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260907185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:47 Heat of formation + Delta-G solvation = -80.802692 kcal Electronic energy + Delta-G solvation = -11546.666604 eV Core-core repulsion = 9533.632298 eV Total energy + Delta-G solvation = -2013.034306 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.93894 -34.51040 -33.34042 -31.29063 -28.62570 -27.61441 -24.20373 -21.17004 -19.99364 -19.36643 -16.96479 -15.91438 -15.22358 -14.89236 -14.12229 -13.78565 -13.42618 -12.73754 -12.31073 -11.93162 -11.57003 -11.22339 -11.14945 -10.90864 -10.84186 -10.74598 -10.27259 -10.03092 -9.89743 -9.52500 -9.29060 -9.00347 -8.55340 -6.05807 -4.03903 3.28565 3.36177 3.37889 4.42830 4.58594 4.86353 4.92117 5.18892 5.27907 5.58840 5.68658 5.73946 5.86439 5.94765 6.04955 6.11061 6.21295 6.36717 6.40511 6.44880 6.52255 6.70749 6.86993 7.23239 7.39186 7.77402 8.16093 8.52773 8.99295 9.56309 11.07773 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.063641 B = 0.010633 C = 0.009993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.859049 B = 2632.717663 C = 2801.296745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.124 4.124 11 C 0.125 3.875 12 O -0.563 6.563 13 C -0.146 4.146 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.112 4.112 17 H 0.263 0.737 18 H 0.018 0.982 19 H 0.009 0.991 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.376 0.624 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.170 -4.081 2.051 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.162 4.162 11 C 0.084 3.916 12 O -0.370 6.370 13 C -0.184 4.184 14 C -0.159 4.159 15 C -0.159 4.159 16 C -0.150 4.150 17 H 0.073 0.927 18 H 0.036 0.964 19 H 0.027 0.973 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.225 0.775 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.304 -4.546 1.957 14.195 hybrid contribution -0.045 1.483 0.102 1.487 sum 13.259 -3.064 2.059 13.764 Atomic orbital electron populations 1.69918 1.06314 1.26878 1.51159 1.25058 0.94753 0.99196 0.94597 0.86769 0.80327 0.83628 0.78498 1.20246 1.21391 1.19054 1.21124 0.89450 0.94453 1.50701 0.91089 1.19592 0.97439 0.92314 0.95937 1.22083 0.91945 1.00348 1.01826 1.22145 0.93624 0.91368 0.84430 1.86387 1.74549 1.30120 1.45960 1.23134 0.96055 1.00328 0.98897 1.22315 0.97535 0.95772 1.00239 1.22109 0.97907 0.96991 0.98901 1.22155 0.97159 0.95383 1.00296 0.92738 0.96411 0.97252 0.92113 0.91883 0.77526 0.91390 0.90571 0.92260 0.91755 0.92148 0.92243 0.90686 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.37 3.55 -27.88 -0.10 -0.47 16 10 C -0.12 -2.49 4.31 -26.73 -0.12 -2.61 16 11 C 0.12 2.12 0.93 -88.96 -0.08 2.04 16 12 O -0.56 -9.91 13.03 -35.23 -0.46 -10.37 16 13 C -0.15 -2.28 5.09 -24.74 -0.13 -2.40 16 14 C -0.12 -1.60 6.81 -25.07 -0.17 -1.77 16 15 C -0.12 -1.54 6.80 -25.61 -0.17 -1.71 16 16 C -0.11 -1.65 6.12 -25.61 -0.16 -1.81 16 17 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 18 H 0.02 0.41 6.34 -51.93 -0.33 0.08 16 19 H 0.01 0.21 6.21 -51.93 -0.32 -0.11 16 20 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 21 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 22 H 0.38 6.09 7.35 45.56 0.33 6.43 16 23 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 24 H 0.08 1.18 8.06 -51.93 -0.42 0.77 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 30 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 LS Contribution 240.95 15.07 3.63 3.63 Total: -1.00 -30.70 240.95 -6.18 -36.87 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.10 Total: 2.32 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -1.35 Total: -22.13 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.77 Total: -27.27 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.46 Total: -10.37 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.70 -6.18 -36.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260907185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.928 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds